iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mtr-058285

Ensembl Protein ID

KEH24865

UniProt Accession

A0A072UGI6; A0A072UGI6_MEDTR

Genbank Protein ID

KEH24865.1

Protein Name

Methyl-CpG-binding domain protein

Genbank Nucleotide ID

CM001222

Gene Name

MTR_6g007650

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MTR_6g007650	KEH24865	KEH24865

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.80e-14	53.7	1245	1290

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkC 51
           vC++Cg   +d+ s++ C+ C+  +H+ Cl+++     p+ + w+Cp+C
   Q: 1245 VCKICGIDRDDD-SVLLCDTCDAEYHKYCLNPP-LARIPEGN-WYCPSC 1290
           8******99987.7*******************.*******6.****** PP

Organism

Medicago truncatula

Protein Sequence
(Fasta)

MAELTDSTAA GNNLPPPQQP PQQIDTRSIL CIDLNEIPSP SSSFVETLPD FTVDIVRTYH 60
ENPAPPPGGP APLPGGVTSC AVCSKSGAGG LVCDGCERSF HLACAGVRGG RIGAASIGEW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGGAAC TAACCGATTC CACCGCCGCC GGTAACAACC TTCCGCCGCC GCAACAACCT 60
CCACAACAAA TTGACACGCG TTCAATCCTC TGCATCGACC TTAACGAGAT CCCTTCACCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001487--Bromodomain
IPR003888--FYrich_N
IPR001739--Methyl_CpG_DNA-bd
IPR028942--WHIM1_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50014--BROMODOMAIN_2
PS51542--FYRN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00439--Bromodomain
PF01429--MBD
PF00628--PHD
PF15612--WHIM1

SMART

SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0009506--C:plasmodesma
GO:0003677--F:DNA binding
GO:0004402--F:histone acetyltransferase activity
GO:0008270--F:zinc ion binding
GO:0043966--P:histone H3 acetylation
GO:0043967--P:histone H4 acetylation
GO:0048573--P:photoperiodism, flowering
GO:0006355--P:regulation of transcription, DNA-templated
GO:0010223--P:secondary shoot formation

KEGG

mtr:MTR_6g007650

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000077	Aegilops tauschii	43.06	6.00e-174	605.00
IUUC-Atr-002838	Amborella trichopoda	38.35	0.00e+00	1309.00
IUUC-Aly-006097	Arabidopsis lyrata	44.85	0.00e+00	1511.00
IUUC-Ath-007218	Arabidopsis thaliana	44.59	0.00e+00	1482.00
IUUC-Bdi-014742	Brachypodium distachyon	36.93	2.00e-162	566.00
IUUC-Bol-015336	Brassica oleracea	43.92	0.00e+00	1496.00
IUUC-Bra-017998	Brassica rapa	43.75	0.00e+00	1484.00
IUUC-Gma-042823	Glycine max	70.69	0.00e+00	2741.00
IUUC-Hvu-047583	Hordeum vulgare	34.77	2.00e-142	499.00
IUUC-Lpe-050785	Leersia perrieri	37.54	0.00e+00	1092.00
IUUC-Mac-065069	Musa acuminata	43.27	0.00e+00	876.00
IUUC-Oba-075854	Oryza barthii	39.98	0.00e+00	1211.00
IUUC-Obr-076343	Oryza brachyantha	38.97	0.00e+00	1202.00
IUUC-Ogl-077886	Oryza glaberrima	39.79	1.00e-180	626.00
IUUC-Ogu-078887	Oryza glumaepatula	39.98	0.00e+00	1211.00
IUUC-Olo-080668	Oryza longistaminata	40.03	0.00e+00	1206.00
IUUC-Ome-081800	Oryza meridionalis	39.87	0.00e+00	1208.00
IUUC-Oni-082593	Oryza nivara	39.98	0.00e+00	1208.00
IUUC-Opu-083363	Oryza punctata	39.78	0.00e+00	1201.00
IUUC-Oru-084298	Oryza rufipogon	39.97	0.00e+00	1205.00
IUUC-Osa-085487	Oryza sativa	38.48	8.00e-164	570.00
IUUC-Ppa-095893	Physcomitrella patens	38.20	5.00e-103	369.00
IUUC-Ppe-101198	Prunus persica	53.70	0.00e+00	1813.00
IUUC-Sit-110633	Setaria italica	42.13	0.00e+00	826.00
IUUC-Tca-121595	Theobroma cacao	50.60	0.00e+00	1936.00
IUUC-Tae-123821	Triticum aestivum	37.80	0.00e+00	1108.00
IUUC-Tur-126242	Triticum urartu	42.28	1.00e-171	597.00
IUUC-Vvi-130929	Vitis vinifera	51.54	0.00e+00	1481.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence