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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007054
UUCD1 version UUC-ArT-01494
Ensembl Protein ID AT1G29340.1
UniProt Accession Q9C7R6; Q8VZK7; PUB17_ARATH
Genbank Protein ID AAG51726.1; AEE31074.1; AAL36401.1; AAN13028.1
Protein Name U-box domain-containing protein 17; Plant U-box protein 17; RING-type E3 ubiquitin transferase PUB17
Genbank Nucleotide ID AC068667; CP002684; AY064045; AY150512
Gene Name PUB17; At1g29340; F15D2.34
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G29340 AT1G29340.1 AT1G29340.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/U-box U-box 16531496; 16699537
Classification
Family E-value Score Start End
E3 activity/RING/U-box 3.50e-31 108.0 305 377
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
    vp++f+CpIsl+lM+dPv++++G+tydr+sI++w+++g+ tcP+t+q l ++ +vPn +l++li +wc ++++
   Q: 305 VPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLIVQWCTASGI 377
    8*******************************************************************98875 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Functions as an E3 ubiquitin ligase.
Functions as an E3 ubiquitin ligase.
Protein Sequence
(Fasta)
MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR 60
SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE STALLCLKEL YLLLYRSKIL 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007054|E3,U-box|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAAAAAGACA AATCTAGTAA TAAAAAGATT AGATTCTAAT CCGTTACATA TTGCCAGTAG 60
TATTGACTTT TACTGGGAAA AACAAAAAAA CTTTCGAGAG AGAGAAAAAA ATAAAAAAAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007054|E3,U-box|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0009814--P:defense response, incompatible interaction
GO:0016567--P:protein ubiquitination

KEGG ath:AT1G29340
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001129 Aegilops tauschii 47.40 7.00e-134 470.00
IUUC-Aly-006027 Arabidopsis lyrata 95.24 0.00e+00 1268.00
IUUC-Bdi-014675 Brachypodium distachyon 46.33 9.00e-138 483.00
IUUC-Bol-015901 Brassica oleracea 84.88 0.00e+00 1054.00
IUUC-Bra-017296 Brassica rapa 84.00 0.00e+00 1030.00
IUUC-Gma-043020 Glycine max 69.96 0.00e+00 875.00
IUUC-Hvu-047822 Hordeum vulgare 46.09 4.00e-145 508.00
IUUC-Lpe-051105 Leersia perrieri 48.81 1.00e-143 503.00
IUUC-Mtr-057764 Medicago truncatula 69.50 0.00e+00 857.00
IUUC-Mac-065609 Musa acuminata 50.31 3.00e-160 557.00
IUUC-Oba-075480 Oryza barthii 49.91 2.00e-135 475.00
IUUC-Obr-076773 Oryza brachyantha 55.70 2.00e-88 318.00
IUUC-Ogl-077156 Oryza glaberrima 47.69 1.00e-144 506.00
IUUC-Ogu-078640 Oryza glumaepatula 47.69 9.00e-145 506.00
IUUC-Oin-079253 Oryza indica 45.63 2.00e-132 465.00
IUUC-Olo-080903 Oryza longistaminata 49.91 2.00e-135 475.00
IUUC-Ome-081982 Oryza meridionalis 47.85 1.00e-145 509.00
IUUC-Oni-082824 Oryza nivara 47.69 9.00e-145 506.00
IUUC-Opu-083758 Oryza punctata 47.85 3.00e-144 504.00
IUUC-Oru-084718 Oryza rufipogon 47.69 9.00e-145 506.00
IUUC-Osa-085662 Oryza sativa 48.64 4.00e-142 497.00
IUUC-Ppa-095502 Physcomitrella patens 41.65 2.00e-109 389.00
IUUC-Pop-099239 Populus trichocarpa 71.11 0.00e+00 889.00
IUUC-Ppe-101890 Prunus persica 71.70 0.00e+00 857.00
IUUC-Smo-109110 Selaginella moellendorffii 38.76 2.00e-108 386.00
IUUC-Sit-110022 Setaria italica 47.64 3.00e-142 498.00
IUUC-Sly-111463 Solanum lycopersicum 67.53 0.00e+00 820.00
IUUC-Stu-111976 Solanum tuberosum 67.12 0.00e+00 822.00
IUUC-Sbi-114100 Sorghum bicolor 48.17 5.00e-147 514.00
IUUC-Tca-121221 Theobroma cacao 73.43 0.00e+00 932.00
IUUC-Tae-124437 Triticum aestivum 46.57 5.00e-145 507.00
IUUC-Tur-126627 Triticum urartu 50.00 3.00e-128 451.00
IUUC-Vvi-131159 Vitis vinifera 67.26 0.00e+00 821.00
Created Date 25-Jun-2017

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