iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d017872	Zm00001d017872_T022	Zm00001d017872_T022
Zm00001d017872	Zm00001d017872_T026	Zm00001d017872_T026
Zm00001d017872	Zm00001d017872_T018	Zm00001d017872_T018
Zm00001d017872	Zm00001d017872_T010	Zm00001d017872_T010
Zm00001d017872	Zm00001d017872_T021	Zm00001d017872_T021
Zm00001d017872	Zm00001d017872_T025	Zm00001d017872_T025
Zm00001d017872	Zm00001d017872_T015	Zm00001d017872_T015
Zm00001d017872	Zm00001d017872_T001	Zm00001d017872_T001
Zm00001d017872	Zm00001d017872_T007	Zm00001d017872_T007

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-07	32.7	338	370

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH d  ++ a+ +d +++++G+ D+t+++WD+r
   Q: 338  GHRDYSFASAWsPDgRTFATGNQDKTCRIWDVR 370
           899999**9***99999**************97 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MSNYYDDYDD IDGMEDDYDM DDPIDDMVDE QQGIRDSDVE DNDYGQPSDV LTQLQNVLLK 60
IATTQIMDLN DKIPDTSSAD ARKGRDIQGI PWEQINITRK KYRQSRLEQY KNYENVPNSG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGCAGTGGA CACTTTCTCT GGTATCAGAG GATCAATGTC CAATTATTAT GATGACTACG 60
ATGACATTGA CGGGATGGAG GATGATTATG ATATGGATGA TCCCATTGAT GACATGGTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001117	Aegilops tauschii	81.51	0.00e+00	755.00
IUUC-Atr-003022	Amborella trichopoda	73.25	0.00e+00	633.00
IUUC-Aly-006558	Arabidopsis lyrata	71.14	1.00e-172	598.00
IUUC-Ath-006618	Arabidopsis thaliana	70.90	1.00e-171	595.00
IUUC-Bdi-014834	Brachypodium distachyon	83.33	0.00e+00	766.00
IUUC-Bol-015525	Brassica oleracea	69.27	4.00e-177	613.00
IUUC-Bra-016810	Brassica rapa	70.85	2.00e-179	621.00
IUUC-Cre-022745	Chlamydomonas reinhardtii	28.66	7.00e-24	103.00
IUUC-Gma-043519	Glycine max	73.80	0.00e+00	642.00
IUUC-Hvu-047189	Hordeum vulgare	82.52	6.00e-170	589.00
IUUC-Lpe-050907	Leersia perrieri	77.63	0.00e+00	698.00
IUUC-Mtr-058694	Medicago truncatula	72.68	0.00e+00	631.00
IUUC-Mac-064914	Musa acuminata	77.00	0.00e+00	664.00
IUUC-Oba-075716	Oryza barthii	82.61	0.00e+00	766.00
IUUC-Obr-076012	Oryza brachyantha	87.90	1.00e-170	592.00
IUUC-Ogl-077272	Oryza glaberrima	81.86	0.00e+00	760.00
IUUC-Ogu-078041	Oryza glumaepatula	82.15	0.00e+00	762.00
IUUC-Oni-082371	Oryza nivara	82.15	0.00e+00	763.00
IUUC-Oru-085156	Oryza rufipogon	82.15	0.00e+00	763.00
IUUC-Osa-086197	Oryza sativa	82.15	0.00e+00	763.00
IUUC-Pop-099666	Populus trichocarpa	75.25	0.00e+00	654.00
IUUC-Pte-104305	Pyrenophora teres	27.49	2.00e-43	170.00
IUUC-Pyt-104723	Pyrenophora triticirepentis	27.23	2.00e-42	166.00
IUUC-Spo-108140	Schizosaccharomyces pombe	29.84	2.00e-39	155.00
IUUC-Smo-109252	Selaginella moellendorffii	57.00	1.00e-143	502.00
IUUC-Sit-110341	Setaria italica	88.48	0.00e+00	720.00
IUUC-Sly-111343	Solanum lycopersicum	74.19	0.00e+00	650.00
IUUC-Stu-112207	Solanum tuberosum	74.37	0.00e+00	650.00
IUUC-Sbi-113791	Sorghum bicolor	92.48	0.00e+00	844.00
IUUC-Tca-121187	Theobroma cacao	74.00	0.00e+00	646.00
IUUC-Tae-122709	Triticum aestivum	78.11	0.00e+00	679.00
IUUC-Tur-126622	Triticum urartu	74.12	0.00e+00	734.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence