iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006946

Ensembl Protein ID

AT3G13290.1

UniProt Accession

Q9LTT9; VCR_ARATH

Genbank Protein ID

BAB02798.1; AEE75329.1

Protein Name

Varicose-related protein

Genbank Nucleotide ID

AB024034; CP002686

Gene Name

VCR; At3g13290; MDC11.12

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G13290	AT3G13290.1	AT3G13290.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPT	UniProt
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.50e-11	42.8	339	372

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtcl...af.sdtllvsGsdDgtikvW.Dlr 31
           H ++vt+l   ++ + t+lvs+s Dgt+k+W D +
   Q: 339  HDGEVTDLsmcQWmT-TRLVSSSVDGTVKIWqDRK 372
           899999973325655.99*************6655 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

As a component of the decapping complex, may play a role in the degradation of mRNAs.

Protein Sequence
(Fasta)

MASSPGNTNP HNPPPFDLGT IFKPSSNPYP PPTGPFLNNQ YNQQLYAPPG IAAQPSPVNQ 60
TQQDVSSSSS ATNLQPQRTL SYPTPPLNPQ SPRVNHNPGT HILALLNNGG AVANQEPSHH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGATTTACG CCCCACTATC GAAAACGCAA GTCTACAAAA CTTCTTTAGC TGTTCTCTCA 60
CTCCTTTCAA GTCATCATCG TCTATCTCTA CTCGCTTTTC GCGCTTCCCC TCTCTACGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0507--mRNA processing
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000932--C:P-body
GO:0042803--F:protein homodimerization activity
GO:0031087--P:deadenylation-independent decapping of nuclear-transcribed mRNA
GO:0006402--P:mRNA catabolic process
GO:0006397--P:mRNA processing

KEGG

ath:AT3G13290

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bdi-014662	Brachypodium distachyon	47.77	0.00e+00	1030.00
IUUC-Obr-076430	Oryza brachyantha	48.64	0.00e+00	1012.00
IUUC-Oin-079418	Oryza indica	48.18	0.00e+00	978.00
IUUC-Oni-082323	Oryza nivara	48.34	0.00e+00	997.00
IUUC-Osa-085798	Oryza sativa	48.91	0.00e+00	1014.00
IUUC-Ptr-091545	Pan troglodytes	25.72	2.00e-06	47.00
IUUC-Sit-110590	Setaria italica	48.05	0.00e+00	1064.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence