iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099951

UUCD1 version

UUC-PoT-00708

Ensembl Protein ID

POPTR_0003s17700.1

UniProt Accession

B9GMD9; B9GMD9_POPTR

Genbank Protein ID

EEE84078.1; ERP65477.1

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

CM000337; CM000337

Gene Name

POPTRDRAFT_750825; POPTR_0001s14560g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s17700	POPTR_0003s17700.1	POPTR_0003s17700.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-27	95.7	549	578
UBD/Beta-Prp	7.60e-43	147.9	497	640

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWD 29
           Ht  +t+++f ++ t l+++s D ++++WD
   Q: 549  HTHIITDVRFrPNsTQLATSSFDSSVRLWD 578
           999********777**************** PP

UBD/Beta-Prp

   S: 83   tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgk.ll 172
           +++ v+++++ + +v++++fs +g+ l+s++hd+ + +w++et q      ++h+++++ v++ p++  l+++s D+ vrlWd +  +  l
   Q: 497  NFSEVSSIRKSNGKVVCCHFSTDGKLLASAGHDKKVVLWNMETLQTEC-NPEEHTHIITDVRFRPNSTQLATSSFDSSVRLWDAAGPRyAL 586
           5667899999************************************99.9**********************************7766267 PP
   S: 173  rtltgghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvk 226
           +t tg ht+ v sl+f++++   + s+++++ +++w++ + +c r+ +g t++v+
   Q: 587  QTYTG-HTSHVVSLDFHPKKnDVFCSCDDNNEIRFWNINQYSCTRISKGGTTQVR 640
           88898.************9955679************************999986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAQSNWEADK MLDVYIYDYL VKKKLHATAK SFMTEGKVAP DPVAIDAPGG FLFEWWSVFW 60
DIFIARTNEK HSETAAAYLE AQQSKTKEQQ QLQMQHFQLM HHAQLQRGGN NNPTMGGPVN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATTTGATCG GTCAATTTTA TTGATTGAGA ATTTATTTAT TTTAATTTAG GTTATTAGCA 60
GTTTTATTTG GTGATTTTTG AGCTGAAATC ATGGCACAGA GTAATTGGGA AGCAGATAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

KEGG

pop:POPTR_0001s14560g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000776	Aegilops tauschii	64.47	2.00e-149	522.00
IUUC-Aly-006471	Arabidopsis lyrata	71.79	0.00e+00	1006.00
IUUC-Ath-007671	Arabidopsis thaliana	70.57	0.00e+00	1003.00
IUUC-Bdi-014855	Brachypodium distachyon	62.95	0.00e+00	920.00
IUUC-Bol-016419	Brassica oleracea	70.28	0.00e+00	1032.00
IUUC-Bra-017537	Brassica rapa	68.21	0.00e+00	1003.00
IUUC-Gma-043351	Glycine max	78.10	0.00e+00	1135.00
IUUC-Hvu-047358	Hordeum vulgare	64.89	3.00e-158	550.00
IUUC-Lpe-051527	Leersia perrieri	62.70	0.00e+00	911.00
IUUC-Mtr-058582	Medicago truncatula	75.35	0.00e+00	1062.00
IUUC-Mac-064608	Musa acuminata	63.22	0.00e+00	899.00
IUUC-Ogl-076931	Oryza glaberrima	63.54	0.00e+00	937.00
IUUC-Oin-079144	Oryza indica	63.16	0.00e+00	930.00
IUUC-Olo-080947	Oryza longistaminata	59.11	0.00e+00	844.00
IUUC-Oni-083067	Oryza nivara	63.04	0.00e+00	929.00
IUUC-Opu-083429	Oryza punctata	63.83	0.00e+00	939.00
IUUC-Osa-085788	Oryza sativa	63.29	0.00e+00	934.00
IUUC-Ppe-101896	Prunus persica	76.27	0.00e+00	1044.00
IUUC-Smo-109593	Selaginella moellendorffii	48.39	0.00e+00	667.00
IUUC-Sit-110618	Setaria italica	63.21	0.00e+00	926.00
IUUC-Sbi-114046	Sorghum bicolor	64.81	0.00e+00	949.00
IUUC-Tca-121754	Theobroma cacao	77.54	0.00e+00	1103.00
IUUC-Tae-125446	Triticum aestivum	62.18	0.00e+00	915.00
IUUC-Tur-126636	Triticum urartu	60.32	0.00e+00	812.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence