iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.20e-07	33.0	134	176

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++f  ++ +++ p C Hvfh dC+  w       +++++CPlCr
   Q: 134  CSVCLNEFqeDEKLRIIPnCCHVFHIDCIDIW------LQGNANCPLCR 176
           ********87444999999*************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDLTDRRNPF NNLVFPPPPP PPSTTFTSPI FPRTSSSGTN FPILAIAVIG ILATAFLLVS 60
YYIFVIKCCL NWHQIDIFRR RRRSSDQNPL MIYSPHEVNR GLDESAIRAI PVFKFKKRDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATAGATCGA GGAAAAAAAA AAAACTCCTA AAAGATTCAG CAAAATGATA ACCTAAATGA 60
TGAAAAAAAC AAAGTAAGAT GATAACCTAA ATAAATAAAT GAGTCATATA AGAAAGAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G04360

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006087	Arabidopsis lyrata	91.36	2.00e-154	538.00
IUUC-Bol-015259	Brassica oleracea	73.42	2.00e-135	474.00
IUUC-Bra-016752	Brassica rapa	75.53	1.00e-137	481.00
IUUC-Mac-064540	Musa acuminata	41.78	8.00e-57	213.00
IUUC-Oba-075181	Oryza barthii	32.13	2.00e-33	135.00
IUUC-Ogl-077643	Oryza glaberrima	32.45	1.00e-33	135.00
IUUC-Ogu-078678	Oryza glumaepatula	32.13	2.00e-33	135.00
IUUC-Ome-081520	Oryza meridionalis	34.57	4.00e-26	110.00
IUUC-Oni-082085	Oryza nivara	32.03	4.00e-33	134.00
IUUC-Oru-084579	Oryza rufipogon	32.12	2.00e-32	132.00
IUUC-Osa-085466	Oryza sativa	33.33	1.00e-32	132.00
IUUC-Sbi-114204	Sorghum bicolor	37.31	2.00e-29	122.00
IUUC-Tae-122936	Triticum aestivum	38.99	3.00e-29	121.00
IUUC-Tur-126376	Triticum urartu	42.36	6.00e-30	124.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence