iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000000581.7	ENSRNOT00000087740.1	ENSRNOP00000071389.1
ENSRNOG00000000581.7	ENSRNOT00000077926.1	ENSRNOP00000069760.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-30	104.6	330	367
UBD/Beta-Prp	4.70e-46	157.7	279	448

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd..tllvsGsdDgtikvWDlrtgvll 36
           gH+  v++++f++  t ++s+++D  +k+WD+ tg ++
   Q: 330  GHSKAVRDICFNTagTQFLSAAYDRYLKLWDTETGQCI 367
           8**********444699******************996 PP

UBD/Beta-Prp

   S: 85   kcvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdlet.gqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkl 171
           k++h+++gh++ v +++++p sg+ l+s s d  i++w++   + cl+ t+ gh+++v+ ++++  g  + s+++Dr ++lWd +tg++
   Q: 279  KQIHVWSGHTKGVSAVRLFPlSGHLLLSCSMDCKIKLWEVYGdRRCLR-TFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQC 366
           899*****************999****************975156776.**************************************** PP
   S: 172  lrtltgghtdsvyslsfdsng...kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..d 250
           + ++t  + +  y+++f+++    + +v+g  d+++  wd+++ge+v+++  h   v+ + f +++ r+vs+s+D+s+r+W  d
   Q: 367  ISRFT--NRKVPYCVKFNPDEdkqNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWewD 448
           ****8..588889***999988889*******************************************************9444 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MSAAIAALAA SYGSGSGSES DSDSEGSRCP LPAADSLMHL TKSPSAKPSL TVAVDSAPEV 60
AVKEDLETGV HLDPAVKEVQ YNPTYETMFA PEFGNEQTFR SPSIAEPRSS SSVYVSPNHI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGGAGTGAA GTACGGCGAG GCTTCAAACC CAGCTCAGGA CCGGGTCTTT AATCAGCGAG 60
GTCCTGAAAG TTACAAATAG TTGTAATCCC TCATGCTTCT TTAGATAAAT GTTCGCGAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032847--PRPF17
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0003723--F:RNA binding
GO:0000398--P:mRNA splicing, via spliceosome

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000473	Aegilops tauschii	48.84	2.00e-137	482.00
IUUC-Aml-002243	Ailuropoda melanoleuca	92.14	0.00e+00	751.00
IUUC-Atr-002502	Amborella trichopoda	49.81	8.00e-147	513.00
IUUC-Apl-003885	Anas platyrhynchos	89.48	0.00e+00	963.00
IUUC-Aca-004854	Anolis carolinensis	65.02	0.00e+00	691.00
IUUC-Aly-006158	Arabidopsis lyrata	48.15	4.00e-149	521.00
IUUC-Ath-007474	Arabidopsis thaliana	51.12	2.00e-149	522.00
IUUC-Ago-007726	Ashbya gossypii	37.08	2.00e-70	259.00
IUUC-Acl-008220	Aspergillus clavatus	41.96	3.00e-123	435.00
IUUC-Afl-008473	Aspergillus flavus	40.81	2.00e-122	432.00
IUUC-Afu-008773	Aspergillus fumigatus	42.06	3.00e-122	432.00
IUUC-Ani-009323	Aspergillus nidulans	42.38	1.00e-109	390.00
IUUC-Ang-009851	Aspergillus niger	41.95	9.00e-123	434.00
IUUC-Aor-009950	Aspergillus oryzae	40.81	2.00e-122	432.00
IUUC-Ate-010372	Aspergillus terreus	43.12	3.00e-124	438.00
IUUC-Ame-011660	Astyanax mexicanus	81.17	0.00e+00	923.00
IUUC-Bgr-012230	Blumeria graminis	49.17	3.00e-121	428.00
IUUC-Bta-012568	Bos taurus	94.02	0.00e+00	1031.00
IUUC-Bci-013646	Botrytis cinerea	55.86	1.00e-118	420.00
IUUC-Bdi-014199	Brachypodium distachyon	49.33	1.00e-138	486.00
IUUC-Bol-015695	Brassica oleracea	50.85	1.00e-155	542.00
IUUC-Bra-017923	Brassica rapa	49.64	5.00e-156	544.00
IUUC-Cel-018535	Caenorhabditis elegans	49.46	5.00e-168	584.00
IUUC-Cja-019071	Callithrix jacchus	94.38	0.00e+00	1036.00
IUUC-Cfa-020559	Canis familiaris	94.02	0.00e+00	1031.00
IUUC-Cpo-022356	Cavia porcellus	94.75	0.00e+00	1037.00
IUUC-Cre-022594	Chlamydomonas reinhardtii	44.02	2.00e-77	281.00
IUUC-Csa-023125	Chlorocebus sabaeus	94.57	0.00e+00	1037.00
IUUC-Cho-024676	Choloepus hoffmanni	90.50	0.00e+00	952.00
IUUC-Cin-025229	Ciona intestinalis	68.25	0.00e+00	729.00
IUUC-Csv-025868	Ciona savignyi	70.53	3.00e-39	152.00
IUUC-Cgl-026739	Colletotrichum gloeosporioides	50.14	6.00e-106	377.00
IUUC-Cne-026885	Cryptococcus neoformans	49.63	3.00e-143	502.00
IUUC-Dre-027631	Danio rerio	80.95	0.00e+00	930.00
IUUC-Dno-029815	Dasypus novemcinctus	83.48	0.00e+00	946.00
IUUC-Dor-031143	Dipodomys ordii	84.06	0.00e+00	917.00
IUUC-Dse-031520	Dothistroma septosporum	42.86	2.00e-96	346.00
IUUC-Dme-032050	Drosophila melanogaster	59.49	0.00e+00	704.00
IUUC-Ete-032866	Echinops telfairi	91.30	0.00e+00	999.00
IUUC-Eca-033384	Equus caballus	94.38	0.00e+00	1033.00
IUUC-Eeu-034471	Erinaceus europaeus	79.71	0.00e+00	796.00
IUUC-Fca-035727	Felis catus	94.02	0.00e+00	1033.00
IUUC-Fal-036774	Ficedula albicollis	89.85	0.00e+00	974.00
IUUC-Fox-037951	Fusarium oxysporum	45.78	2.00e-124	439.00
IUUC-Fso-038287	Fusarium solani	57.35	3.00e-121	429.00
IUUC-Gmo-039670	Gadus morhua	78.06	0.00e+00	896.00
IUUC-Ggr-039764	Gaeumannomyces graminis	45.85	5.00e-110	391.00
IUUC-Gga-040293	Gallus gallus	90.33	0.00e+00	974.00
IUUC-Gac-042159	Gasterosteus aculeatus	80.87	0.00e+00	929.00
IUUC-Gma-044299	Glycine max	63.64	5.00e-137	481.00
IUUC-Ggo-044864	Gorilla gorilla	94.38	0.00e+00	1036.00
IUUC-Hsa-046602	Homo sapiens	94.38	0.00e+00	1036.00
IUUC-Itr-047985	Ictidomys tridecemlineatus	99.52	0.00e+00	818.00
IUUC-Kpa-049318	Komagataella pastoris	45.85	4.00e-96	345.00
IUUC-Lch-049796	Latimeria chalumnae	75.82	0.00e+00	835.00
IUUC-Lpe-051153	Leersia perrieri	50.00	1.00e-139	489.00
IUUC-Loc-052467	Lepisosteus oculatus	82.78	0.00e+00	938.00
IUUC-Lma-053107	Leptosphaeria maculans	48.16	8.00e-113	400.00
IUUC-Laf-053787	Loxodonta africana	93.86	0.00e+00	1063.00
IUUC-Mcc-055706	Macaca mulatta	94.75	0.00e+00	1040.00
IUUC-Meu-056757	Macropus eugenii	80.92	0.00e+00	637.00
IUUC-Mor-057079	Magnaporthe oryzae	49.58	4.00e-110	392.00
IUUC-Mpo-057533	Magnaporthe poae	50.71	3.00e-112	399.00
IUUC-Mtr-057950	Medicago truncatula	62.39	2.00e-135	476.00
IUUC-Mla-058910	Melampsora laricipopulina	45.53	3.00e-140	491.00
IUUC-Mga-059366	Meleagris gallopavo	89.31	0.00e+00	972.00
IUUC-Mvi-060349	Microbotryum violaceum	58.69	1.00e-136	480.00
IUUC-Mmr-061209	Microcebus murinus	94.57	0.00e+00	1074.00
IUUC-Mdo-062118	Monodelphis domestica	91.30	0.00e+00	1047.00
IUUC-Mmu-063173	Mus musculus	95.11	0.00e+00	1040.00
IUUC-Mac-065080	Musa acuminata	48.72	1.00e-147	516.00
IUUC-Mpu-066659	Mustela putorius furo	93.84	0.00e+00	1031.00
IUUC-Mlu-067029	Myotis lucifugus	94.02	0.00e+00	1010.00
IUUC-Nfi-068334	Neosartorya fischeri	43.36	2.00e-123	436.00
IUUC-Ncr-068675	Neurospora crassa	49.03	3.00e-101	362.00
IUUC-Nle-070113	Nomascus leucogenys	94.02	0.00e+00	1036.00
IUUC-Opr-070685	Ochotona princeps	86.23	0.00e+00	984.00
IUUC-Ont-071680	Oreochromis niloticus	80.80	0.00e+00	924.00
IUUC-Oan-073573	Ornithorhynchus anatinus	91.67	0.00e+00	906.00
IUUC-Ocu-074074	Oryctolagus cuniculus	94.38	0.00e+00	1070.00
IUUC-Oba-075625	Oryza barthii	49.11	3.00e-140	491.00
IUUC-Obr-076510	Oryza brachyantha	48.42	6.00e-141	494.00
IUUC-Ogl-077275	Oryza glaberrima	49.11	3.00e-140	491.00
IUUC-Ogu-078563	Oryza glumaepatula	49.11	4.00e-140	491.00
IUUC-Oin-079898	Oryza indica	63.45	4.00e-134	471.00
IUUC-Olo-081080	Oryza longistaminata	63.93	1.00e-135	476.00
IUUC-Oni-083121	Oryza nivara	49.11	3.00e-140	491.00
IUUC-Opu-083329	Oryza punctata	50.19	6.00e-140	490.00
IUUC-Oru-084807	Oryza rufipogon	48.44	1.00e-121	430.00
IUUC-Osa-086039	Oryza sativa	49.20	8.00e-141	493.00
IUUC-Ola-087149	Oryzias latipes	79.34	0.00e+00	912.00
IUUC-Olu-087627	Ostreococcus lucimarinus	42.58	2.00e-115	409.00
IUUC-Oga-088359	Otolemur garnettii	94.57	0.00e+00	1038.00
IUUC-Oar-089390	Ovis aries	94.02	0.00e+00	1028.00
IUUC-Ptr-090894	Pan troglodytes	94.38	0.00e+00	1036.00
IUUC-Pan-092476	Papio anubis	94.75	0.00e+00	1040.00
IUUC-Psi-093527	Pelodiscus sinensis	87.62	0.00e+00	927.00
IUUC-Pno-094771	Phaeosphaeria nodorum	48.88	2.00e-112	399.00
IUUC-Ppa-095386	Physcomitrella patens	48.96	5.00e-149	521.00
IUUC-Pfo-096139	Poecilia formosa	81.90	0.00e+00	934.00
IUUC-Pab-097838	Pongo abelii	93.91	0.00e+00	915.00
IUUC-Pop-098945	Populus trichocarpa	50.38	1.00e-146	513.00
IUUC-Pca-100876	Procavia capensis	78.62	0.00e+00	879.00
IUUC-Ppe-101777	Prunus persica	49.72	6.00e-145	507.00
IUUC-Pva-102418	Pteropus vampyrus	93.66	0.00e+00	1030.00
IUUC-Pgr-103456	Puccinia graminis	48.52	7.00e-150	524.00
IUUC-Ptt-103731	Puccinia triticina	44.64	5.00e-136	478.00
IUUC-Pte-104386	Pyrenophora teres	49.88	3.00e-114	405.00
IUUC-Pyt-104560	Pyrenophora triticirepentis	50.49	4.00e-114	404.00
IUUC-Sce-106339	Saccharomyces cerevisiae	37.89	1.00e-75	276.00
IUUC-Sha-106709	Sarcophilus harrisii	91.49	0.00e+00	1045.00
IUUC-Sja-107817	Schizosaccharomyces japonicus	39.58	6.00e-118	417.00
IUUC-Spo-108331	Schizosaccharomyces pombe	41.18	1.00e-115	410.00
IUUC-Ssl-108530	Sclerotinia sclerotiorum	53.15	3.00e-112	398.00
IUUC-Smo-108778	Selaginella moellendorffii	44.55	5.00e-122	431.00
IUUC-Sit-110446	Setaria italica	47.70	3.00e-138	485.00
IUUC-Sly-111330	Solanum lycopersicum	49.25	2.00e-144	505.00
IUUC-Stu-112610	Solanum tuberosum	48.89	2.00e-144	505.00
IUUC-Sar-113065	Sorex araneus	77.67	6.00e-126	444.00
IUUC-Sbi-114005	Sorghum bicolor	64.04	7.00e-136	477.00
IUUC-Sre-114988	Sporisorium reilianum	48.15	1.00e-148	520.00
IUUC-Ssc-115760	Sus scrofa	94.38	0.00e+00	1036.00
IUUC-Tgu-116493	Taeniopygia guttata	90.33	0.00e+00	980.00
IUUC-Tru-118489	Takifugu rubripes	77.47	0.00e+00	893.00
IUUC-Tsy-119332	Tarsius syrichta	94.02	0.00e+00	1070.00
IUUC-Tni-120202	Tetraodon nigroviridis	74.22	0.00e+00	825.00
IUUC-Tca-121429	Theobroma cacao	48.60	2.00e-144	506.00
IUUC-Tre-122162	Trichoderma reesei	56.09	1.00e-122	433.00
IUUC-Tvi-122500	Trichoderma virens	55.52	2.00e-121	429.00
IUUC-Tae-125557	Triticum aestivum	48.55	4.00e-137	481.00
IUUC-Tur-126554	Triticum urartu	48.45	3.00e-135	475.00
IUUC-Tme-126919	Tuber melanosporum	43.58	1.00e-128	453.00
IUUC-Tbe-127968	Tupaia belangeri	88.95	0.00e+00	994.00
IUUC-Ttr-129215	Tursiops truncatus	93.66	0.00e+00	1022.00
IUUC-Uma-129622	Ustilago maydis	47.32	7.00e-150	524.00
IUUC-Vda-129750	Verticillium dahliae	55.24	4.00e-120	424.00
IUUC-Vpa-130617	Vicugna pacos	91.47	0.00e+00	923.00
IUUC-Vvi-131238	Vitis vinifera	61.81	3.00e-134	472.00
IUUC-Xtr-131865	Xenopus tropicalis	85.48	0.00e+00	955.00
IUUC-Xma-133627	Xiphophorus maculatus	82.08	0.00e+00	937.00
IUUC-Yli-134390	Yarrowia lipolytica	51.28	4.00e-113	401.00
IUUC-Zma-135925	Zea mays	50.29	1.00e-134	473.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence