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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006747
Ensembl Protein ID AT3G19770.1
UniProt Accession Q9LT31; VPS9A_ARATH
Genbank Protein ID BAB01291.1; BAB01291.1; AEE76284.1; AAK76484.1; AAL85069.1
Protein Name Vacuolar protein sorting-associated protein 9A
Genbank Nucleotide ID AB025631; AP000417; CP002686; AY045810; AY079338
Gene Name VPS9A; VPS9; At3g19770; MMB12.26
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G19770 AT3G19770.2 AT3G19770.2
AT3G19770 AT3G19770.1 AT3G19770.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINAHINT
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
dbPTMUniProt
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/ZnF/ZnF_A20 28.03 4.00e-20 95.90 IUUC-Cel-018199
UBD/Alpha-Helix/CUE 31.56 2.00e-27 118.00 IUUC-Sce-106460
UBD/Alpha-Helix/CUE 34.72 6.00e-42 166.00 IUUC-Spo-108087
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1.
 Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1.
Protein Sequence
(Fasta)
MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA 60
FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE EVIADEKLFQ KMSLVQQFIS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006747|UBD,ZnF_A20;UBD,CUE|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGGTGAAATT GATGAACGAA ACCCAAAACC GGGTTAGGAC CGAATTAGAT TCACTAACTT 60
AACAACACCA GGACCAATAA CCGGAACTTA ATAAATAAAC GACCGTGGTT TTGTTTGTTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006747|UBD,ZnF_A20;UBD,CUE|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0342--GTP-binding
KW-0343--GTPase activation
KW-0547--Nucleotide-binding
KW-0597--Phosphoprotein
KW-1185--Reference proteome
Interpro

IPR003123--VPS9
PROSITE

PS51205--VPS9
Pfam

PF02204--VPS9
SMART

SM00167--VPS9
Gene Ontology

GO:0005829--C:cytosol
GO:0016020--C:membrane
GO:0005634--C:nucleus
GO:0005525--F:GTP binding
GO:0005096--F:GTPase activator activity
GO:0005089--F:Rho guanyl-nucleotide exchange factor activity
GO:0000919--P:cell plate assembly
GO:0042546--P:cell wall biogenesis
GO:0009793--P:embryo development ending in seed dormancy
GO:0048528--P:post-embryonic root development
KEGG ath:AT3G19770
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000198 Aegilops tauschii 52.40 2.00e-114 405.00
IUUC-Aml-001771 Ailuropoda melanoleuca 37.04 2.00e-28 119.00
IUUC-Atr-003154 Amborella trichopoda 62.75 1.00e-122 432.00
IUUC-Apl-004018 Anas platyrhynchos 33.33 3.00e-29 122.00
IUUC-Aca-005227 Anolis carolinensis 34.64 5.00e-23 102.00
IUUC-Aly-006138 Arabidopsis lyrata 94.04 0.00e+00 946.00
IUUC-Ago-007776 Ashbya gossypii 30.74 4.00e-29 121.00
IUUC-Acl-008235 Aspergillus clavatus 33.57 1.00e-43 171.00
IUUC-Afl-008570 Aspergillus flavus 33.45 3.00e-43 169.00
IUUC-Afu-008815 Aspergillus fumigatus 33.80 1.00e-43 171.00
IUUC-Ani-009381 Aspergillus nidulans 35.66 9.00e-47 181.00
IUUC-Ang-009615 Aspergillus niger 34.27 4.00e-44 172.00
IUUC-Aor-010195 Aspergillus oryzae 33.45 3.00e-43 169.00
IUUC-Ate-010514 Aspergillus terreus 31.97 2.00e-44 173.00
IUUC-Ame-011365 Astyanax mexicanus 34.12 3.00e-32 132.00
IUUC-Bgr-012102 Blumeria graminis 31.69 6.00e-47 181.00
IUUC-Bta-013124 Bos taurus 37.04 7.00e-28 117.00
IUUC-Bci-013943 Botrytis cinerea 33.33 4.00e-45 175.00
IUUC-Bdi-014539 Brachypodium distachyon 63.07 8.00e-135 473.00
IUUC-Bol-015515 Brassica oleracea 82.30 0.00e+00 704.00
IUUC-Bra-017264 Brassica rapa 81.70 0.00e+00 689.00
IUUC-Cel-018199 Caenorhabditis elegans 28.03 8.00e-23 101.00
IUUC-Cfa-020845 Canis familiaris 37.04 5.00e-28 118.00
IUUC-Cre-022696 Chlamydomonas reinhardtii 42.53 1.00e-56 213.00
IUUC-Cho-025076 Choloepus hoffmanni 34.11 8.00e-27 114.00
IUUC-Cin-025400 Ciona intestinalis 33.33 8.00e-31 127.00
IUUC-Csv-025941 Ciona savignyi 32.17 5.00e-30 125.00
IUUC-Cgl-026725 Colletotrichum gloeosporioides 33.68 6.00e-45 175.00
IUUC-Cne-027057 Cryptococcus neoformans 36.78 1.00e-39 157.00
IUUC-Dre-028484 Danio rerio 35.04 2.00e-31 129.00
IUUC-Dno-028906 Dasypus novemcinctus 37.04 9.00e-28 117.00
IUUC-Dor-030339 Dipodomys ordii 34.55 6.00e-32 133.00
IUUC-Dse-031437 Dothistroma septosporum 32.18 8.00e-42 164.00
IUUC-Ete-032573 Echinops telfairi 33.05 1.00e-24 107.00
IUUC-Eca-033711 Equus caballus 37.04 6.00e-28 117.00
IUUC-Eeu-034847 Erinaceus europaeus 35.19 9.00e-32 132.00
IUUC-Fca-035447 Felis catus 37.04 5.00e-28 118.00
IUUC-Fal-036605 Ficedula albicollis 33.60 2.00e-29 122.00
IUUC-Fox-037967 Fusarium oxysporum 26.12 9.00e-26 111.00
IUUC-Fso-038110 Fusarium solani 31.09 9.00e-44 171.00
IUUC-Gmo-038785 Gadus morhua 32.06 8.00e-31 127.00
IUUC-Ggr-039760 Gaeumannomyces graminis 33.10 5.00e-40 159.00
IUUC-Gga-040584 Gallus gallus 32.68 2.00e-29 122.00
IUUC-Gac-042317 Gasterosteus aculeatus 31.89 5.00e-29 121.00
IUUC-Gma-044237 Glycine max 65.97 1.00e-151 528.00
IUUC-Ggo-044709 Gorilla gorilla 34.09 7.00e-32 132.00
IUUC-Hsa-046625 Homo sapiens 37.04 3.00e-28 119.00
IUUC-Hvu-047155 Hordeum vulgare 57.71 1.00e-134 472.00
IUUC-Itr-048753 Ictidomys tridecemlineatus 34.43 6.00e-28 118.00
IUUC-Kpa-049160 Komagataella pastoris 29.43 5.00e-33 135.00
IUUC-Lch-050529 Latimeria chalumnae 34.78 2.00e-31 129.00
IUUC-Lpe-051024 Leersia perrieri 58.39 3.00e-139 487.00
IUUC-Loc-052644 Lepisosteus oculatus 34.03 1.00e-32 134.00
IUUC-Lma-053102 Leptosphaeria maculans 34.63 7.00e-44 171.00
IUUC-Mcc-055231 Macaca mulatta 35.00 2.00e-32 135.00
IUUC-Meu-056244 Macropus eugenii 35.26 1.00e-28 122.00
IUUC-Mor-057255 Magnaporthe oryzae 33.57 4.00e-44 172.00
IUUC-Mpo-057454 Magnaporthe poae 33.80 2.00e-43 169.00
IUUC-Mtr-058098 Medicago truncatula 64.54 1.00e-148 518.00
IUUC-Mla-059068 Melampsora laricipopulina 33.33 8.00e-35 140.00
IUUC-Mga-059624 Meleagris gallopavo 37.04 1.00e-27 117.00
IUUC-Mvi-060282 Microbotryum violaceum 49.59 5.00e-22 99.80
IUUC-Mac-065188 Musa acuminata 58.85 5.00e-122 430.00
IUUC-Mlu-067431 Myotis lucifugus 36.51 3.00e-27 115.00
IUUC-Nfi-068422 Neosartorya fischeri 32.89 3.00e-44 172.00
IUUC-Ncr-068843 Neurospora crassa 33.68 5.00e-45 175.00
IUUC-Opr-070632 Ochotona princeps 35.00 3.00e-32 134.00
IUUC-Ont-071789 Oreochromis niloticus 31.46 1.00e-31 130.00
IUUC-Oba-075738 Oryza barthii 57.01 3.00e-125 441.00
IUUC-Obr-076355 Oryza brachyantha 60.14 2.00e-135 474.00
IUUC-Ogl-077217 Oryza glaberrima 59.77 9.00e-137 479.00
IUUC-Ogu-078686 Oryza glumaepatula 57.24 7.00e-127 446.00
IUUC-Oin-080047 Oryza indica 60.23 1.00e-137 482.00
IUUC-Olo-080472 Oryza longistaminata 55.61 3.00e-122 431.00
IUUC-Ome-081589 Oryza meridionalis 60.69 4.00e-139 488.00
IUUC-Oni-082700 Oryza nivara 57.24 7.00e-127 446.00
IUUC-Opu-083923 Oryza punctata 55.95 2.00e-58 218.00
IUUC-Oru-084318 Oryza rufipogon 57.24 7.00e-127 446.00
IUUC-Osa-086246 Oryza sativa 65.00 8.00e-21 90.50
IUUC-Olu-087719 Ostreococcus lucimarinus 35.81 5.00e-60 224.00
IUUC-Oga-088992 Otolemur garnettii 37.04 5.00e-28 119.00
IUUC-Ptr-091636 Pan troglodytes 37.04 3.00e-28 119.00
IUUC-Psi-093194 Pelodiscus sinensis 37.17 2.00e-28 120.00
IUUC-Pma-094614 Petromyzon marinus 46.81 9.00e-20 87.00
IUUC-Pno-094831 Phaeosphaeria nodorum 33.22 2.00e-43 170.00
IUUC-Ppa-095705 Physcomitrella patens 47.47 3.00e-116 411.00
IUUC-Pfo-096694 Poecilia formosa 34.10 8.00e-33 134.00
IUUC-Pop-099891 Populus trichocarpa 67.87 6.00e-154 536.00
IUUC-Pca-100542 Procavia capensis 35.29 6.00e-30 126.00
IUUC-Ppe-101334 Prunus persica 68.93 3.00e-163 567.00
IUUC-Pva-103225 Pteropus vampyrus 46.30 8.00e-23 100.00
IUUC-Pgr-103564 Puccinia graminis 36.33 2.00e-39 157.00
IUUC-Ptt-103802 Puccinia triticina 35.49 5.00e-36 145.00
IUUC-Pte-104345 Pyrenophora teres 34.98 3.00e-45 176.00
IUUC-Pyt-104716 Pyrenophora triticirepentis 34.28 1.00e-44 174.00
IUUC-Sce-106460 Saccharomyces cerevisiae 31.56 2.00e-31 129.00
IUUC-Sha-106919 Sarcophilus harrisii 36.54 2.00e-29 123.00
IUUC-Sja-107880 Schizosaccharomyces japonicus 37.22 7.00e-43 167.00
IUUC-Spo-108087 Schizosaccharomyces pombe 35.09 1.00e-44 173.00
IUUC-Ssl-108614 Sclerotinia sclerotiorum 38.46 8.00e-13 68.60
IUUC-Smo-108740 Selaginella moellendorffii 51.89 2.00e-103 368.00
IUUC-Sit-110678 Setaria italica 64.25 1.00e-137 482.00
IUUC-Sly-111526 Solanum lycopersicum 62.25 4.00e-137 480.00
IUUC-Stu-112494 Solanum tuberosum 58.52 3.00e-138 484.00
IUUC-Sar-112929 Sorex araneus 36.78 1.00e-23 104.00
IUUC-Sbi-114242 Sorghum bicolor 64.62 1.00e-146 512.00
IUUC-Sre-115224 Sporisorium reilianum 34.75 4.00e-35 143.00
IUUC-Tgu-117499 Taeniopygia guttata 33.60 2.00e-29 123.00
IUUC-Tru-118027 Takifugu rubripes 31.04 6.00e-32 131.00
IUUC-Tni-120855 Tetraodon nigroviridis 31.98 2.00e-33 136.00
IUUC-Tca-121213 Theobroma cacao 67.27 2.00e-157 548.00
IUUC-Tre-122186 Trichoderma reesei 32.70 7.00e-46 177.00
IUUC-Tvi-122541 Trichoderma virens 32.23 1.00e-43 170.00
IUUC-Tae-122942 Triticum aestivum 58.24 1.00e-132 466.00
IUUC-Tur-126572 Triticum urartu 56.97 6.00e-120 423.00
IUUC-Tme-127023 Tuber melanosporum 34.09 9.00e-41 160.00
IUUC-Tbe-127453 Tupaia belangeri 37.04 3.00e-28 119.00
IUUC-Uma-129660 Ustilago maydis 36.22 4.00e-35 143.00
IUUC-Vda-129737 Verticillium dahliae 30.94 1.00e-42 167.00
IUUC-Vpa-130105 Vicugna pacos 35.00 4.00e-32 133.00
IUUC-Vvi-131088 Vitis vinifera 62.75 1.00e-134 472.00
IUUC-Xtr-132799 Xenopus tropicalis 32.02 6.00e-29 121.00
IUUC-Xma-133345 Xiphophorus maculatus 33.59 2.00e-31 129.00
IUUC-Yli-134416 Yarrowia lipolytica 32.36 7.00e-37 147.00
IUUC-Zma-134750 Zea mays 59.23 2.00e-136 478.00
Created Date 25-Jun-2017

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