iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ogl-077427

UUCD1 version

UUC-OrG-01994

Ensembl Protein ID

ORGLA04G0259900.1

UniProt Accession

I1PQY0; I1PQY0_ORYGL

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ORGLA04G0259900	ORGLA04G0259900.1	ORGLA04G0259900.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.30e-37	124.1	143	181
UBD/Beta-Prp	4.90e-58	197.3	15	278

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+++k+WDl+ g+ll+
   Q: 143  GHTRGVNAIRFtPDgRWVVSGGEDNVVKLWDLTAGKLLH 181
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
            +h+s ++c+k+  + +++l+tg++d+++ +w + +++ + slsgh+++v +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ 
   Q: 15   VAHSSNVNCLKIgRKTSRVLVTGGDDHKVNLWAIGKPNSILSLSGHTSAVESVNFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC 106
           579999999***999********************************************9999***************************** PP
   S: 98   lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfd 189
           +s++f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D++v+lWdl  gkll++++  h++++++++f+
   Q: 107  MSVDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLHDFKC-HEGQIQCIDFH 196
           *********************************.********************************************98.*********** PP
   S: 190  sngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav 272
           +  + l++gs d+tvk+wdl+t e + +    t+ v+s+ f p++  l++g  ++s++++  +   +  t+    s+++   v
   Q: 197  PHEFLLATGSSDKTVKFWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTVDVGWSRLSDLNV 278
           ******************************************999999999.5788888666666666666555555555544 PP

Organism

Oryza glaberrima

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGDD HKVNLWAIGK PNSILSLSGH 60
TSAVESVNFD STEVFVAAGA ASGTIKLWDL EEAKIVRTLT GHRSNCMSVD FHPFGEFFAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACGACCA ACACCAAGCG CGCCTACAAG CTCCGTATCC TCGCGAATTC GTTTCCAGTA 60
TTTTTGACTA GTATTTTTTG TATTTTTTTT CGAGGTACAT TGTGTCTGTT TGACCGATCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	68.80	0.00e+00	1254.00
IUUC-Aml-002187	Ailuropoda melanoleuca	54.18	6.00e-104	370.00
IUUC-Atr-002899	Amborella trichopoda	68.61	0.00e+00	665.00
IUUC-Apl-003305	Anas platyrhynchos	52.54	6.00e-103	367.00
IUUC-Aca-004635	Anolis carolinensis	51.62	4.00e-92	331.00
IUUC-Aly-005711	Arabidopsis lyrata	64.48	0.00e+00	641.00
IUUC-Ath-007606	Arabidopsis thaliana	64.27	0.00e+00	639.00
IUUC-Acl-008307	Aspergillus clavatus	32.82	9.00e-31	127.00
IUUC-Bta-012527	Bos taurus	54.85	7.00e-107	380.00
IUUC-Bdi-014652	Brachypodium distachyon	81.70	0.00e+00	1511.00
IUUC-Bol-016374	Brassica oleracea	60.86	2.00e-180	625.00
IUUC-Bra-017390	Brassica rapa	60.38	7.00e-175	606.00
IUUC-Cja-019706	Callithrix jacchus	54.85	2.00e-106	378.00
IUUC-Cfa-020139	Canis familiaris	46.76	1.00e-99	356.00
IUUC-Cpo-021710	Cavia porcellus	55.18	1.00e-107	382.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	45.31	4.00e-85	308.00
IUUC-Csa-023546	Chlorocebus sabaeus	54.67	7.00e-103	367.00
IUUC-Cin-025156	Ciona intestinalis	46.51	8.00e-89	320.00
IUUC-Csv-025962	Ciona savignyi	49.66	2.00e-89	321.00
IUUC-Dre-028215	Danio rerio	51.97	2.00e-103	369.00
IUUC-Dno-029314	Dasypus novemcinctus	55.18	2.00e-106	379.00
IUUC-Dor-030482	Dipodomys ordii	54.85	2.00e-107	382.00
IUUC-Dme-032188	Drosophila melanogaster	37.87	6.00e-57	214.00
IUUC-Eca-034143	Equus caballus	54.52	5.00e-104	370.00
IUUC-Fca-035924	Felis catus	55.18	4.00e-107	381.00
IUUC-Fal-037387	Ficedula albicollis	53.47	2.00e-106	379.00
IUUC-Gmo-038692	Gadus morhua	52.33	3.00e-103	368.00
IUUC-Gga-040597	Gallus gallus	53.85	4.00e-106	377.00
IUUC-Gac-042004	Gasterosteus aculeatus	50.00	5.00e-100	357.00
IUUC-Gma-044134	Glycine max	69.59	0.00e+00	668.00
IUUC-Ggo-044761	Gorilla gorilla	54.85	2.00e-106	379.00
IUUC-Hsa-045698	Homo sapiens	51.66	5.00e-107	380.00
IUUC-Hvu-047649	Hordeum vulgare	80.04	0.00e+00	1486.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	54.85	4.00e-107	381.00
IUUC-Lch-049674	Latimeria chalumnae	53.67	4.00e-108	384.00
IUUC-Lpe-051554	Leersia perrieri	90.10	0.00e+00	1709.00
IUUC-Loc-052623	Lepisosteus oculatus	53.74	7.00e-101	360.00
IUUC-Laf-054587	Loxodonta africana	54.85	6.00e-107	380.00
IUUC-Mcc-055851	Macaca mulatta	54.85	2.00e-106	379.00
IUUC-Meu-056704	Macropus eugenii	54.85	1.00e-106	379.00
IUUC-Mtr-058053	Medicago truncatula	74.95	0.00e+00	681.00
IUUC-Mga-059608	Meleagris gallopavo	52.36	4.00e-103	367.00
IUUC-Mmr-061154	Microcebus murinus	54.85	1.00e-106	379.00
IUUC-Mdo-062365	Monodelphis domestica	55.18	2.00e-106	379.00
IUUC-Mmu-063754	Mus musculus	54.37	2.00e-107	382.00
IUUC-Mac-064439	Musa acuminata	70.75	0.00e+00	674.00
IUUC-Mpu-066245	Mustela putorius furo	55.52	2.00e-107	382.00
IUUC-Mlu-067692	Myotis lucifugus	54.22	3.00e-106	378.00
IUUC-Nle-070051	Nomascus leucogenys	54.52	2.00e-105	375.00
IUUC-Opr-070855	Ochotona princeps	53.85	1.00e-105	376.00
IUUC-Ont-071883	Oreochromis niloticus	51.16	2.00e-99	355.00
IUUC-Oan-073293	Ornithorhynchus anatinus	55.16	7.00e-103	367.00
IUUC-Ocu-074644	Oryctolagus cuniculus	54.85	4.00e-107	381.00
IUUC-Oba-075448	Oryza barthii	79.06	0.00e+00	1343.00
IUUC-Obr-076385	Oryza brachyantha	94.56	0.00e+00	1743.00
IUUC-Ogu-078428	Oryza glumaepatula	76.09	0.00e+00	1118.00
IUUC-Oin-079811	Oryza indica	98.53	0.00e+00	1830.00
IUUC-Olo-080245	Oryza longistaminata	94.00	0.00e+00	1712.00
IUUC-Ome-081239	Oryza meridionalis	95.26	0.00e+00	1693.00
IUUC-Oni-082640	Oryza nivara	79.06	0.00e+00	1343.00
IUUC-Opu-083748	Oryza punctata	84.66	0.00e+00	1568.00
IUUC-Oru-084609	Oryza rufipogon	79.06	0.00e+00	1343.00
IUUC-Osa-085988	Oryza sativa	94.78	0.00e+00	1713.00
IUUC-Ola-087483	Oryzias latipes	49.67	4.00e-95	341.00
IUUC-Oga-087964	Otolemur garnettii	54.85	7.00e-107	380.00
IUUC-Oar-089483	Ovis aries	54.52	6.00e-105	374.00
IUUC-Ptr-091387	Pan troglodytes	51.66	5.00e-107	380.00
IUUC-Pan-092623	Papio anubis	54.85	2.00e-106	379.00
IUUC-Psi-093830	Pelodiscus sinensis	54.45	5.00e-101	360.00
IUUC-Ppa-095379	Physcomitrella patens	82.67	8.00e-158	550.00
IUUC-Pfo-096755	Poecilia formosa	47.92	3.00e-99	355.00
IUUC-Pab-097564	Pongo abelii	54.85	5.00e-106	377.00
IUUC-Pop-099149	Populus trichocarpa	72.90	0.00e+00	686.00
IUUC-Pca-100357	Procavia capensis	58.82	4.00e-78	284.00
IUUC-Ppe-101237	Prunus persica	76.19	0.00e+00	716.00
IUUC-Pva-102397	Pteropus vampyrus	50.50	6.00e-94	337.00
IUUC-Rno-105349	Rattus norvegicus	54.37	1.00e-107	382.00
IUUC-Smo-109409	Selaginella moellendorffii	68.25	6.00e-161	560.00
IUUC-Sit-110360	Setaria italica	82.00	0.00e+00	1515.00
IUUC-Sly-111307	Solanum lycopersicum	72.63	0.00e+00	674.00
IUUC-Stu-112462	Solanum tuberosum	70.80	0.00e+00	649.00
IUUC-Sar-112953	Sorex araneus	46.05	3.00e-58	218.00
IUUC-Ssc-115949	Sus scrofa	48.77	6.00e-50	191.00
IUUC-Tgu-117461	Taeniopygia guttata	53.47	5.00e-107	380.00
IUUC-Tru-117865	Takifugu rubripes	50.00	3.00e-93	335.00
IUUC-Tsy-119036	Tarsius syrichta	61.16	7.00e-42	164.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.83	6.00e-92	330.00
IUUC-Tca-121185	Theobroma cacao	54.67	0.00e+00	936.00
IUUC-Tae-125307	Triticum aestivum	80.89	0.00e+00	1495.00
IUUC-Tur-126411	Triticum urartu	69.64	0.00e+00	1236.00
IUUC-Ttr-128172	Tursiops truncatus	54.85	4.00e-107	381.00
IUUC-Vvi-131489	Vitis vinifera	73.94	0.00e+00	707.00
IUUC-Xtr-132915	Xenopus tropicalis	52.98	2.00e-101	362.00
IUUC-Xma-134133	Xiphophorus maculatus	50.66	7.00e-97	347.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence