iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tur-126190

Ensembl Protein ID

TRIUR3_34738-P1

UniProt Accession

M8B0W7; M8B0W7_TRIUA

Genbank Protein ID

EMS67129.1

Protein Name

Chromodomain-helicase-DNA-binding protein 4

Genbank Nucleotide ID

KD023563

Gene Name

TRIUR3_34738

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIUR3_34738	TRIUR3_34738-T1	TRIUR3_34738-P1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.70e-09	37.3	511	552

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 6    vCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           +C+e+g + + +  C+ C + fHpaC++l+    +p++e w+C +C+
   Q: 511  LCRECGLGGD-IFPCKMCPRSFHPACVGLP---GFPSEE-WFCDNCT 552
           4555555543.9******************...*****8.******6 PP

Organism

Triticum urartu

Protein Sequence
(Fasta)

MMPEVSHNAA EAPSLAAEAQ PVANQDAAAE ASPKASHSDD IVMVDAEAQL NAQGDADLMG 60
PCAFPAPMEK KKKEEEGDGS NAAVPPQHQM DAHPAPVTEA ESAGEAATQD TGVEPSTAAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATGCCCG AGGTCAGCCA CAATGCTGCT GAGGCGCCGT CCTTGGCTGC TGAGGCACAG 60
CCGGTGGCCA ACCAAGATGC TGCCGCCGAG GCGTCACCAA AGGCCAGCCA CTCTGACGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR016181--Acyl_CoA_acyltransferase
IPR032308--Jas
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF16135--Jas

SMART

SM00249--PHD

Gene Ontology

GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006057	Arabidopsis lyrata	36.23	3.00e-99	355.00
IUUC-Ath-007521	Arabidopsis thaliana	36.99	1.00e-108	386.00
IUUC-Bol-016318	Brassica oleracea	37.02	3.00e-110	391.00
IUUC-Bra-017162	Brassica rapa	37.33	2.00e-107	382.00
IUUC-Gma-042898	Glycine max	38.86	3.00e-129	455.00
IUUC-Hvu-047802	Hordeum vulgare	82.63	0.00e+00	1424.00
IUUC-Lpe-050827	Leersia perrieri	48.27	0.00e+00	629.00
IUUC-Mtr-058688	Medicago truncatula	37.83	6.00e-124	437.00
IUUC-Mac-064830	Musa acuminata	51.10	0.00e+00	663.00
IUUC-Oba-075837	Oryza barthii	64.87	0.00e+00	1003.00
IUUC-Obr-076448	Oryza brachyantha	69.41	0.00e+00	1045.00
IUUC-Ogu-078244	Oryza glumaepatula	65.50	0.00e+00	1036.00
IUUC-Oin-079045	Oryza indica	71.79	0.00e+00	667.00
IUUC-Olo-080735	Oryza longistaminata	52.71	0.00e+00	681.00
IUUC-Ome-081425	Oryza meridionalis	64.63	0.00e+00	1030.00
IUUC-Oni-082279	Oryza nivara	64.99	0.00e+00	1005.00
IUUC-Opu-083459	Oryza punctata	64.80	0.00e+00	1002.00
IUUC-Oru-085169	Oryza rufipogon	65.38	0.00e+00	1038.00
IUUC-Osa-085819	Oryza sativa	65.50	0.00e+00	1041.00
IUUC-Pop-099262	Populus trichocarpa	41.99	3.00e-139	488.00
IUUC-Ppe-101775	Prunus persica	45.17	9.00e-162	563.00
IUUC-Sit-109839	Setaria italica	63.73	0.00e+00	990.00
IUUC-Sly-111378	Solanum lycopersicum	44.87	2.00e-163	568.00
IUUC-Stu-112427	Solanum tuberosum	46.34	2.00e-164	572.00
IUUC-Tca-121314	Theobroma cacao	43.37	1.00e-158	553.00
IUUC-Tae-124462	Triticum aestivum	87.64	0.00e+00	1355.00
IUUC-Vvi-131561	Vitis vinifera	47.04	4.00e-151	527.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence