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Tag Content
iUUCD ID IUUC-Aly-006508
Ensembl Protein ID fgenesh2_kg.1__4311__AT1G52360.1
UniProt Accession D7KJG4; D7KJG4_ARALL
Genbank Protein ID EFH67952.1
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID GL348713
Gene Name ARALYDRAFT_474357
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.1__4311__AT1G52360.1 fgenesh2_kg.1__4311__AT1G52360.1 fgenesh2_kg.1__4311__AT1G52360.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 6.90e-36 121.4 184 224
UBD/Beta-Prp 5.50e-67 226.7 14 289
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+ +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 184  HQKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 224
           999*****966*9778*******************999986 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgk 85
           +++++++v+ +p +++++++ ++gt+ +w+++t+ + +s++  e +v++ kf+ ++++ v g++D+ i+v++++t +
   Q: 14   RSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFIARKQWVVAGADDMYIRVYNYNTMD 90
           5678999********************************************************************** PP
   S: 86   cvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtv 161
            v ++++h+d++++++++p+  +++s s+d  i++wd+e+g+   ++++gh++ v+ v+++p++ n ++s+slDrt+
   Q: 91   KVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTI 167
           ******************************************9999******************************* PP
   S: 162  rlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnder 236
           ++W+l + +   tl   h++ v++++     ++++l++gs+d t k+wd+qt++cv+tl+ght nv+ v f+p+  +
   Q: 168  KIWNLGSPDPNFTLDA-HQKGVNCVDyfTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243
           **************98.*********6444555******************************************** PP
   S: 237  lvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvl 282
           +++gs+Dg++riW  ++  l +tl++  ++v+++ +++ +++v++ 
   Q: 244  IITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIG 289
           **********************************997777777654 PP
   
Organism Arabidopsis lyrata
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MPLRLEIKRK LAQRSERVKS VDLHPTEPWI LASLYSGTLC IWNYQTQVMA KSFEVTELPV 60
RSAKFIARKQ WVVAGADDMY IRVYNYNTMD KVKVFEAHSD YIRCVAVHPT LPYVLSSSDD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Aly-006508|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGTTTTTTTC CATCACACCG AGCTAAACGT CGTTGGTTCT TCGATCTCCG ATTTGCAGAT 60
TTAAGCGATA ATACGAGATC CGAAGGTCAC ACAAGCCTTC CTCCGCTTAA TCTGTAACTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Aly-006508|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport
KEGG aly:ARALYDRAFT_474357
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000654 Aegilops tauschii 71.40 0.00e+00 1363.00
IUUC-Aml-002154 Ailuropoda melanoleuca 60.66 0.00e+00 1106.00
IUUC-Atr-003090 Amborella trichopoda 77.54 0.00e+00 1499.00
IUUC-Apl-003976 Anas platyrhynchos 60.31 0.00e+00 1106.00
IUUC-Aca-004301 Anolis carolinensis 60.43 0.00e+00 1110.00
IUUC-Ath-007635 Arabidopsis thaliana 98.49 0.00e+00 1805.00
IUUC-Acl-008237 Aspergillus clavatus 52.80 0.00e+00 901.00
IUUC-Afu-008845 Aspergillus fumigatus 52.67 0.00e+00 889.00
IUUC-Ang-009654 Aspergillus niger 56.36 0.00e+00 810.00
IUUC-Aor-009939 Aspergillus oryzae 52.00 0.00e+00 905.00
IUUC-Ame-010922 Astyanax mexicanus 56.11 0.00e+00 965.00
IUUC-Bci-013866 Botrytis cinerea 53.79 0.00e+00 892.00
IUUC-Bdi-015046 Brachypodium distachyon 78.61 0.00e+00 1508.00
IUUC-Bol-016271 Brassica oleracea 94.69 0.00e+00 1745.00
IUUC-Bra-017758 Brassica rapa 93.05 0.00e+00 1738.00
IUUC-Cja-019145 Callithrix jacchus 60.59 0.00e+00 1108.00
IUUC-Cfa-020564 Canis familiaris 60.71 0.00e+00 1109.00
IUUC-Cpo-022201 Cavia porcellus 60.66 0.00e+00 1107.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 65.50 0.00e+00 1109.00
IUUC-Csa-023383 Chlorocebus sabaeus 64.56 0.00e+00 825.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 49.82 0.00e+00 800.00
IUUC-Cne-026986 Cryptococcus neoformans 49.64 0.00e+00 864.00
IUUC-Cme-027219 Cyanidioschyzon merolae 51.75 0.00e+00 885.00
IUUC-Dre-027846 Danio rerio 61.96 0.00e+00 1112.00
IUUC-Dor-030462 Dipodomys ordii 58.77 0.00e+00 850.00
IUUC-Ete-033166 Echinops telfairi 57.50 0.00e+00 694.00
IUUC-Eca-034180 Equus caballus 59.41 0.00e+00 1068.00
IUUC-Fca-036265 Felis catus 60.71 0.00e+00 1108.00
IUUC-Fox-037711 Fusarium oxysporum 54.18 0.00e+00 851.00
IUUC-Fso-038268 Fusarium solani 53.56 0.00e+00 858.00
IUUC-Gmo-039046 Gadus morhua 60.24 0.00e+00 1097.00
IUUC-Ggr-039863 Gaeumannomyces graminis 53.32 0.00e+00 878.00
IUUC-Gga-041112 Gallus gallus 60.95 0.00e+00 1115.00
IUUC-Gac-041733 Gasterosteus aculeatus 60.75 0.00e+00 1067.00
IUUC-Gma-044126 Glycine max 88.08 0.00e+00 1665.00
IUUC-Ggo-044984 Gorilla gorilla 60.59 0.00e+00 1108.00
IUUC-Hsa-046698 Homo sapiens 60.71 0.00e+00 1108.00
IUUC-Hvu-047669 Hordeum vulgare 88.70 0.00e+00 691.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 61.74 0.00e+00 1104.00
IUUC-Lch-050473 Latimeria chalumnae 59.17 0.00e+00 1107.00
IUUC-Lpe-051579 Leersia perrieri 80.09 0.00e+00 1506.00
IUUC-Loc-052675 Lepisosteus oculatus 61.84 0.00e+00 1112.00
IUUC-Laf-053757 Loxodonta africana 58.97 0.00e+00 1102.00
IUUC-Mcc-054859 Macaca mulatta 60.59 0.00e+00 1108.00
IUUC-Mor-057264 Magnaporthe oryzae 52.76 0.00e+00 859.00
IUUC-Mpo-057538 Magnaporthe poae 52.95 0.00e+00 882.00
IUUC-Mtr-058618 Medicago truncatula 87.09 0.00e+00 1624.00
IUUC-Mga-059875 Meleagris gallopavo 60.68 0.00e+00 1111.00
IUUC-Mmr-061261 Microcebus murinus 60.71 0.00e+00 1110.00
IUUC-Mdo-062076 Monodelphis domestica 60.83 0.00e+00 1114.00
IUUC-Mmu-063324 Mus musculus 60.71 0.00e+00 1110.00
IUUC-Mac-064636 Musa acuminata 81.08 0.00e+00 1543.00
IUUC-Mpu-065961 Mustela putorius furo 60.71 0.00e+00 1107.00
IUUC-Mlu-067059 Myotis lucifugus 59.88 0.00e+00 1095.00
IUUC-Ncr-068659 Neurospora crassa 52.88 0.00e+00 892.00
IUUC-Nle-069034 Nomascus leucogenys 60.59 0.00e+00 1108.00
IUUC-Ont-071563 Oreochromis niloticus 61.47 0.00e+00 1107.00
IUUC-Ocu-074522 Oryctolagus cuniculus 60.16 0.00e+00 1107.00
IUUC-Oba-075760 Oryza barthii 79.48 0.00e+00 1517.00
IUUC-Obr-076163 Oryza brachyantha 80.17 0.00e+00 1518.00
IUUC-Ogl-077450 Oryza glaberrima 80.48 0.00e+00 1543.00
IUUC-Ogu-078994 Oryza glumaepatula 79.48 0.00e+00 1515.00
IUUC-Oin-079211 Oryza indica 82.32 0.00e+00 1477.00
IUUC-Olo-080731 Oryza longistaminata 78.59 0.00e+00 1495.00
IUUC-Ome-081762 Oryza meridionalis 77.49 0.00e+00 1392.00
IUUC-Oni-082324 Oryza nivara 79.48 0.00e+00 1515.00
IUUC-Opu-083400 Oryza punctata 78.09 0.00e+00 1485.00
IUUC-Oru-084829 Oryza rufipogon 79.61 0.00e+00 1518.00
IUUC-Osa-086026 Oryza sativa 84.66 0.00e+00 1534.00
IUUC-Olu-087655 Ostreococcus lucimarinus 67.45 0.00e+00 1156.00
IUUC-Oga-088163 Otolemur garnettii 58.58 0.00e+00 1053.00
IUUC-Oar-089842 Ovis aries 60.59 0.00e+00 1109.00
IUUC-Ptr-090501 Pan troglodytes 60.59 0.00e+00 1109.00
IUUC-Pan-092011 Papio anubis 60.59 0.00e+00 1108.00
IUUC-Psi-093308 Pelodiscus sinensis 60.83 0.00e+00 1112.00
IUUC-Pma-094695 Petromyzon marinus 58.30 0.00e+00 978.00
IUUC-Ppa-095638 Physcomitrella patens 77.18 0.00e+00 1412.00
IUUC-Pfo-096587 Poecilia formosa 61.23 0.00e+00 1106.00
IUUC-Pab-097926 Pongo abelii 57.74 0.00e+00 1035.00
IUUC-Pop-099634 Populus trichocarpa 86.88 0.00e+00 1625.00
IUUC-Pca-100965 Procavia capensis 59.72 0.00e+00 1072.00
IUUC-Ppe-101470 Prunus persica 87.66 0.00e+00 1661.00
IUUC-Pva-102451 Pteropus vampyrus 57.72 0.00e+00 842.00
IUUC-Rno-105979 Rattus norvegicus 53.17 0.00e+00 813.00
IUUC-Sha-106905 Sarcophilus harrisii 60.83 0.00e+00 1114.00
IUUC-Smo-108695 Selaginella moellendorffii 79.66 0.00e+00 1387.00
IUUC-Sit-110239 Setaria italica 80.15 0.00e+00 1550.00
IUUC-Sly-111775 Solanum lycopersicum 83.73 0.00e+00 1598.00
IUUC-Stu-112906 Solanum tuberosum 83.03 0.00e+00 1454.00
IUUC-Sbi-113801 Sorghum bicolor 79.10 0.00e+00 1499.00
IUUC-Sre-115040 Sporisorium reilianum 53.11 0.00e+00 905.00
IUUC-Ssc-115593 Sus scrofa 60.59 0.00e+00 1107.00
IUUC-Tgu-117239 Taeniopygia guttata 60.55 0.00e+00 1110.00
IUUC-Tru-118025 Takifugu rubripes 60.92 0.00e+00 1100.00
IUUC-Tni-120142 Tetraodon nigroviridis 60.82 0.00e+00 1095.00
IUUC-Tca-121613 Theobroma cacao 88.07 0.00e+00 1687.00
IUUC-Tae-125292 Triticum aestivum 81.26 0.00e+00 1560.00
IUUC-Tur-126283 Triticum urartu 72.57 0.00e+00 1364.00
IUUC-Tme-127041 Tuber melanosporum 53.25 0.00e+00 904.00
IUUC-Tbe-127770 Tupaia belangeri 60.15 0.00e+00 886.00
IUUC-Ttr-129294 Tursiops truncatus 59.93 0.00e+00 1106.00
IUUC-Uma-129351 Ustilago maydis 51.16 0.00e+00 887.00
IUUC-Vda-129716 Verticillium dahliae 53.38 0.00e+00 900.00
IUUC-Vvi-131689 Vitis vinifera 89.28 0.00e+00 1609.00
IUUC-Xtr-132633 Xenopus tropicalis 61.38 0.00e+00 1102.00
IUUC-Xma-133347 Xiphophorus maculatus 61.47 0.00e+00 1107.00
Created Date 25-Jun-2017

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