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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007630
UUCD1 version UUC-ArT-00768
Ensembl Protein ID AT1G79990.1
UniProt Accession Q9CAA0; F4HQE6; Q9SSD5; COB21_ARATH
Genbank Protein ID AAD55465.1; AAG52258.1; AEE36338.1; AEE36339.2; AAM14001.1
Protein Name Coatomer subunit beta'-1; Beta'-coat protein 1
Genbank Nucleotide ID AC009322; AC011717; CP002684; CP002684; AY090955
Gene Name At1g79990; F18B13.7; F19K16.4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G79990 AT1G79990.1 AT1G79990.1
AT1G79990 AT1G79990.2 AT1G79990.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 6.20e-35 118.6 184 224
UBD/Beta-Prp 4.70e-67 227.2 10 290
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H  +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 184  HLKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 224
           8889****966*9778*******************999986 PP
   

   UBD/Beta-Prp
   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
            ++++++++++v+ +p +++++++ ++gt+ +w+++t+++++s+   e +v++ kf+ ++++ v g++D++i+v++++t + + ++++h d+++++++
   Q: 10   KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAV 107
           567788999***************************************************************************************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvs 197
           +p+  +++s s+d  i++wd+e+g+   ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h + v++++     ++++l++
   Q: 108  HPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWNLGSPDPNFTLDA-HLKGVNCVDyfTGGDKPYLIT 204
           *************************9999*********************************************98.*********6444555***** PP
   S: 198  gsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlg 283
           gs+d t k+wd+qt++cv+tl+ght nv+ v f+p+  ++++gs+Dg++riW  ++  l +tl++  ++v+++ +++ +++v++  
   Q: 205  GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGHIKGSRRVVIGY 290
           *************************************************************************9977777776544 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity).
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity).
Protein Sequence
(Fasta)
MPLRLEIKRK FAQRSERVKS VDLHPTEPWI LASLYSGTLC IWNYQTQTMV KSFDVTELPV 60
RSAKFIARKQ WVVAGADDMF IRVYNYNTMD KIKVFEAHAD YIRCVAVHPT LPYVLSSSDD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007630|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTAGACCCAG ATTCAGATCC AAATCGCCAA CGCGCACTGG AAGTGGGATC ACCACCACTG 60
CGCTTCTTCT TCTTCGTCAT CTCTGATCCC CCCTGCGATC AGGGGCCATT TCCGTCGATA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007630|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER
KEGG ath:AT1G79990
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000654 Aegilops tauschii 71.25 0.00e+00 1365.00
IUUC-Apl-003976 Anas platyrhynchos 61.41 0.00e+00 1108.00
IUUC-Aca-004301 Anolis carolinensis 61.45 0.00e+00 1110.00
IUUC-Aly-005643 Arabidopsis lyrata 96.49 0.00e+00 1726.00
IUUC-Ago-007914 Ashbya gossypii 47.17 0.00e+00 718.00
IUUC-Acl-008237 Aspergillus clavatus 52.57 0.00e+00 900.00
IUUC-Afu-008845 Aspergillus fumigatus 53.28 0.00e+00 889.00
IUUC-Ani-009135 Aspergillus nidulans 53.15 0.00e+00 882.00
IUUC-Aor-009939 Aspergillus oryzae 52.61 0.00e+00 908.00
IUUC-Ate-010355 Aspergillus terreus 53.41 0.00e+00 880.00
IUUC-Bgr-012249 Blumeria graminis 52.44 0.00e+00 879.00
IUUC-Bta-013579 Bos taurus 61.90 0.00e+00 971.00
IUUC-Bci-013866 Botrytis cinerea 54.47 0.00e+00 893.00
IUUC-Bol-015466 Brassica oleracea 91.85 0.00e+00 1618.00
IUUC-Bra-016617 Brassica rapa 94.11 0.00e+00 1603.00
IUUC-Cja-019145 Callithrix jacchus 61.82 0.00e+00 1108.00
IUUC-Cfa-020564 Canis familiaris 61.70 0.00e+00 1108.00
IUUC-Csa-023383 Chlorocebus sabaeus 65.20 0.00e+00 832.00
IUUC-Cho-024454 Choloepus hoffmanni 58.70 0.00e+00 924.00
IUUC-Cin-025681 Ciona intestinalis 59.24 0.00e+00 998.00
IUUC-Csv-026012 Ciona savignyi 59.12 0.00e+00 970.00
IUUC-Dre-027846 Danio rerio 61.99 0.00e+00 1117.00
IUUC-Dor-030462 Dipodomys ordii 59.61 0.00e+00 861.00
IUUC-Dse-031268 Dothistroma septosporum 52.93 0.00e+00 887.00
IUUC-Ete-033166 Echinops telfairi 57.96 0.00e+00 702.00
IUUC-Fca-036265 Felis catus 61.70 0.00e+00 1107.00
IUUC-Fal-037202 Ficedula albicollis 60.93 0.00e+00 1060.00
IUUC-Gmo-039046 Gadus morhua 61.26 0.00e+00 1099.00
IUUC-Gga-041112 Gallus gallus 61.94 0.00e+00 1115.00
IUUC-Gac-041733 Gasterosteus aculeatus 61.14 0.00e+00 1073.00
IUUC-Ggo-044984 Gorilla gorilla 61.82 0.00e+00 1108.00
IUUC-Hsa-046698 Homo sapiens 61.94 0.00e+00 1110.00
IUUC-Kpa-049265 Komagataella pastoris 50.87 0.00e+00 847.00
IUUC-Lch-050473 Latimeria chalumnae 62.33 0.00e+00 1110.00
IUUC-Lpe-051579 Leersia perrieri 80.04 0.00e+00 1500.00
IUUC-Loc-052675 Lepisosteus oculatus 61.74 0.00e+00 1113.00
IUUC-Lma-053218 Leptosphaeria maculans 52.26 0.00e+00 866.00
IUUC-Mcc-054859 Macaca mulatta 61.82 0.00e+00 1109.00
IUUC-Mor-057264 Magnaporthe oryzae 54.18 0.00e+00 863.00
IUUC-Mla-058937 Melampsora laricipopulina 53.59 0.00e+00 894.00
IUUC-Mga-059875 Meleagris gallopavo 61.79 0.00e+00 1111.00
IUUC-Mvi-060240 Microbotryum violaceum 52.87 0.00e+00 900.00
IUUC-Mmr-061261 Microcebus murinus 61.70 0.00e+00 1107.00
IUUC-Mdo-062076 Monodelphis domestica 61.82 0.00e+00 1114.00
IUUC-Mac-064636 Musa acuminata 81.36 0.00e+00 1543.00
IUUC-Mpu-065961 Mustela putorius furo 61.70 0.00e+00 1106.00
IUUC-Nfi-068277 Neosartorya fischeri 53.21 0.00e+00 881.00
IUUC-Nle-069034 Nomascus leucogenys 61.82 0.00e+00 1109.00
IUUC-Opr-070334 Ochotona princeps 62.91 0.00e+00 1007.00
IUUC-Ont-071563 Oreochromis niloticus 61.74 0.00e+00 1112.00
IUUC-Oan-073416 Ornithorhynchus anatinus 62.21 0.00e+00 1050.00
IUUC-Obr-076201 Oryza brachyantha 79.52 0.00e+00 1509.00
IUUC-Osa-086026 Oryza sativa 80.92 0.00e+00 1526.00
IUUC-Ola-087245 Oryzias latipes 61.45 0.00e+00 1108.00
IUUC-Oar-089842 Ovis aries 61.58 0.00e+00 1107.00
IUUC-Ptr-090501 Pan troglodytes 61.82 0.00e+00 1109.00
IUUC-Pan-092011 Papio anubis 61.82 0.00e+00 1109.00
IUUC-Psi-093308 Pelodiscus sinensis 62.06 0.00e+00 1115.00
IUUC-Pma-094695 Petromyzon marinus 58.19 0.00e+00 976.00
IUUC-Pno-094785 Phaeosphaeria nodorum 59.66 8.00e-106 377.00
IUUC-Pfo-096587 Poecilia formosa 61.62 0.00e+00 1113.00
IUUC-Pab-097926 Pongo abelii 59.24 0.00e+00 1039.00
IUUC-Pva-102451 Pteropus vampyrus 58.56 0.00e+00 853.00
IUUC-Pgr-103590 Puccinia graminis 52.59 0.00e+00 901.00
IUUC-Pte-104274 Pyrenophora teres 53.54 0.00e+00 900.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 52.86 0.00e+00 850.00
IUUC-Rno-105979 Rattus norvegicus 53.12 0.00e+00 820.00
IUUC-Sce-106269 Saccharomyces cerevisiae 47.61 0.00e+00 748.00
IUUC-Sha-106905 Sarcophilus harrisii 61.82 0.00e+00 1113.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 47.59 0.00e+00 785.00
IUUC-Smo-108695 Selaginella moellendorffii 80.15 0.00e+00 1383.00
IUUC-Sit-110239 Setaria italica 80.65 0.00e+00 1542.00
IUUC-Sar-113472 Sorex araneus 57.35 0.00e+00 767.00
IUUC-Sbi-113801 Sorghum bicolor 78.94 0.00e+00 1497.00
IUUC-Ssc-115593 Sus scrofa 61.58 0.00e+00 1106.00
IUUC-Tgu-117239 Taeniopygia guttata 61.65 0.00e+00 1110.00
IUUC-Tru-118025 Takifugu rubripes 61.19 0.00e+00 1105.00
IUUC-Tsy-118824 Tarsius syrichta 58.03 0.00e+00 790.00
IUUC-Tni-120142 Tetraodon nigroviridis 61.09 0.00e+00 1098.00
IUUC-Tvi-122546 Trichoderma virens 53.43 0.00e+00 871.00
IUUC-Tur-126283 Triticum urartu 72.20 0.00e+00 1368.00
IUUC-Tbe-127770 Tupaia belangeri 61.14 0.00e+00 896.00
IUUC-Xtr-132633 Xenopus tropicalis 61.45 0.00e+00 1105.00
IUUC-Xma-133347 Xiphophorus maculatus 61.86 0.00e+00 1114.00
IUUC-Yli-134455 Yarrowia lipolytica 50.95 0.00e+00 806.00
Created Date 25-Jun-2017

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