iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cme-027219

Ensembl Protein ID

CMT617CT

UniProt Accession

M1UY38; M1UY38_CYAM1

Genbank Protein ID

BAM83516.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

AP006502

Gene Name

CYME_CMT617C

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CMT617C	CMT617CT	CMT617CT

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.20e-31	103.8	227	257
UBD/Beta-Prp	2.30e-58	195.7	13	283

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gHt+ v++++f +  +l++++s Dgt++vW+
   Q: 227  GHTANVSAVQFhPVrPLILTASEDGTVRVWN 257
           8**********96679**************9 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdk 108
            ++++++ v  +  +++++++ ++g + ++d+++  +l++++  +++v++ +f +++++ + +++D  ++v++++t + v  +++h+d+v+s++++p++  
   Q: 13   VRSERVKGVELHSREPWVLVALYTGQVLIFDYDRCVALKQFEVSDQPVRCARFVERKNWVIAAADDLYVRVYNYNTMEKVCEFEAHQDYVRSIAVHPTRPL 113
           56778999999****************************************************************************************** PP
   S: 109  lvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgtvkl 206
           l+++s+d  i++wd+e ++    +++gh++ v+ vv++p++ n ++s+slD tv++W+l++      l+g h + v+s+++ +    ++l+sg++d + ++
   Q: 114  LLTASDDMAIKLWDWERNWNCTMVFEGHSHYVMQVVFNPKDpNTFASASLDCTVKIWSLSSPVPNMSLEG-HRKGVNSVDYYPGNdkPFLISGGDDERAIV 213
           ******************99988**********************************************9.*********9886677************** PP
   S: 207  wdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfg 276
           wd+qt +  ++l ght+nv+ v+f+p   +++++s+Dg++r+W++ +  l ++l++  ++ +s a+l+ +
   Q: 214  WDMQTRTPAQELVGHTANVSAVQFHPVRPLILTASEDGTVRVWNSNTYRLETMLSYGFERCWSLACLRSS 283
           ******************************************************************6544 PP

Organism

Cyanidioschyzon merolae

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLDPVKV AQVRSERVKG VELHSREPWV LVALYTGQVL IFDYDRCVAL KQFEVSDQPV 60
RCARFVERKN WVIAAADDLY VRVYNYNTME KVCEFEAHQD YVRSIAVHPT RPLLLTASDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCTCTAC GTCTTGATCC CGTGAAAGTT GCCCAGGTGC GGAGTGAGCG CGTCAAGGGT 60
GTAGAGCTAC ACTCGCGAGA GCCGTGGGTG CTGGTGGCCC TCTACACCGG CCAGGTGCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

cme:CYME_CMT617C

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000222	Aegilops tauschii	51.48	2.00e-180	623.00
IUUC-Aml-002154	Ailuropoda melanoleuca	48.39	0.00e+00	838.00
IUUC-Atr-003090	Amborella trichopoda	47.40	0.00e+00	822.00
IUUC-Apl-003976	Anas platyrhynchos	48.18	0.00e+00	840.00
IUUC-Aca-004301	Anolis carolinensis	47.58	0.00e+00	842.00
IUUC-Aly-006508	Arabidopsis lyrata	51.75	0.00e+00	863.00
IUUC-Ath-007635	Arabidopsis thaliana	51.56	0.00e+00	855.00
IUUC-Ago-007914	Ashbya gossypii	39.53	0.00e+00	628.00
IUUC-Acl-008237	Aspergillus clavatus	46.63	0.00e+00	766.00
IUUC-Afl-008535	Aspergillus flavus	46.64	0.00e+00	736.00
IUUC-Afu-008845	Aspergillus fumigatus	46.63	0.00e+00	763.00
IUUC-Ani-009135	Aspergillus nidulans	46.91	0.00e+00	746.00
IUUC-Ang-009654	Aspergillus niger	47.65	0.00e+00	674.00
IUUC-Aor-009939	Aspergillus oryzae	46.18	0.00e+00	775.00
IUUC-Ate-010355	Aspergillus terreus	46.01	0.00e+00	749.00
IUUC-Ame-010922	Astyanax mexicanus	44.36	0.00e+00	736.00
IUUC-Bgr-012249	Blumeria graminis	45.08	0.00e+00	750.00
IUUC-Bta-013579	Bos taurus	48.53	0.00e+00	752.00
IUUC-Bci-013866	Botrytis cinerea	45.21	0.00e+00	729.00
IUUC-Bdi-015046	Brachypodium distachyon	51.19	0.00e+00	856.00
IUUC-Bol-016012	Brassica oleracea	52.62	0.00e+00	879.00
IUUC-Bra-017758	Brassica rapa	50.36	0.00e+00	870.00
IUUC-Cel-018387	Caenorhabditis elegans	45.53	0.00e+00	764.00
IUUC-Cja-019145	Callithrix jacchus	48.45	0.00e+00	839.00
IUUC-Cfa-020564	Canis familiaris	48.45	0.00e+00	839.00
IUUC-Cpo-022201	Cavia porcellus	48.26	0.00e+00	835.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	50.49	0.00e+00	770.00
IUUC-Csa-023383	Chlorocebus sabaeus	51.49	0.00e+00	638.00
IUUC-Cho-024454	Choloepus hoffmanni	45.17	0.00e+00	696.00
IUUC-Cin-025681	Ciona intestinalis	46.93	0.00e+00	776.00
IUUC-Csv-026012	Ciona savignyi	47.55	0.00e+00	757.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	40.92	0.00e+00	635.00
IUUC-Cne-026986	Cryptococcus neoformans	44.99	0.00e+00	764.00
IUUC-Dre-027846	Danio rerio	48.00	0.00e+00	842.00
IUUC-Dor-030462	Dipodomys ordii	46.25	0.00e+00	643.00
IUUC-Dse-031268	Dothistroma septosporum	45.72	0.00e+00	762.00
IUUC-Dme-031791	Drosophila melanogaster	48.39	0.00e+00	801.00
IUUC-Ete-033166	Echinops telfairi	44.82	7.00e-147	512.00
IUUC-Eca-034180	Equus caballus	47.23	0.00e+00	803.00
IUUC-Eeu-035086	Erinaceus europaeus	38.46	5.00e-90	323.00
IUUC-Fca-036265	Felis catus	48.45	0.00e+00	839.00
IUUC-Fal-037202	Ficedula albicollis	47.92	0.00e+00	812.00
IUUC-Fox-037711	Fusarium oxysporum	43.71	0.00e+00	674.00
IUUC-Fso-038268	Fusarium solani	43.49	0.00e+00	671.00
IUUC-Gmo-039046	Gadus morhua	47.32	0.00e+00	831.00
IUUC-Ggr-039863	Gaeumannomyces graminis	44.58	0.00e+00	709.00
IUUC-Gga-041112	Gallus gallus	48.05	0.00e+00	842.00
IUUC-Gac-041733	Gasterosteus aculeatus	47.64	0.00e+00	811.00
IUUC-Gma-044333	Glycine max	51.75	0.00e+00	875.00
IUUC-Ggo-044984	Gorilla gorilla	48.45	0.00e+00	838.00
IUUC-Hsa-046698	Homo sapiens	48.57	0.00e+00	838.00
IUUC-Hvu-047669	Hordeum vulgare	57.63	7.00e-129	451.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	48.39	0.00e+00	836.00
IUUC-Kpa-049265	Komagataella pastoris	43.55	0.00e+00	744.00
IUUC-Lch-050473	Latimeria chalumnae	47.92	0.00e+00	835.00
IUUC-Lpe-051579	Leersia perrieri	51.88	0.00e+00	860.00
IUUC-Loc-052675	Lepisosteus oculatus	48.29	0.00e+00	846.00
IUUC-Lma-053218	Leptosphaeria maculans	46.22	0.00e+00	746.00
IUUC-Laf-053757	Loxodonta africana	48.27	0.00e+00	829.00
IUUC-Mcc-054859	Macaca mulatta	48.45	0.00e+00	838.00
IUUC-Meu-056174	Macropus eugenii	41.40	8.00e-81	292.00
IUUC-Mor-057264	Magnaporthe oryzae	45.44	0.00e+00	691.00
IUUC-Mpo-057538	Magnaporthe poae	44.71	0.00e+00	725.00
IUUC-Mtr-058310	Medicago truncatula	49.94	0.00e+00	881.00
IUUC-Mla-058937	Melampsora laricipopulina	42.80	0.00e+00	729.00
IUUC-Mga-059875	Meleagris gallopavo	48.33	0.00e+00	835.00
IUUC-Mvi-060240	Microbotryum violaceum	45.52	0.00e+00	752.00
IUUC-Mmr-061261	Microcebus murinus	48.45	0.00e+00	839.00
IUUC-Mdo-062076	Monodelphis domestica	48.21	0.00e+00	841.00
IUUC-Mmu-063324	Mus musculus	48.45	0.00e+00	841.00
IUUC-Mac-064636	Musa acuminata	48.16	0.00e+00	861.00
IUUC-Mpu-065961	Mustela putorius furo	48.45	0.00e+00	840.00
IUUC-Mlu-067059	Myotis lucifugus	47.83	0.00e+00	811.00
IUUC-Nfi-068277	Neosartorya fischeri	47.01	0.00e+00	759.00
IUUC-Ncr-068659	Neurospora crassa	45.22	0.00e+00	750.00
IUUC-Nle-069034	Nomascus leucogenys	48.45	0.00e+00	837.00
IUUC-Opr-070334	Ochotona princeps	48.71	0.00e+00	767.00
IUUC-Ont-071563	Oreochromis niloticus	47.99	0.00e+00	839.00
IUUC-Oan-073416	Ornithorhynchus anatinus	48.13	0.00e+00	803.00
IUUC-Ocu-074522	Oryctolagus cuniculus	48.20	0.00e+00	834.00
IUUC-Oba-075760	Oryza barthii	50.87	0.00e+00	849.00
IUUC-Obr-076201	Oryza brachyantha	52.24	0.00e+00	859.00
IUUC-Ogl-077450	Oryza glaberrima	51.50	0.00e+00	868.00
IUUC-Ogu-078994	Oryza glumaepatula	50.87	0.00e+00	847.00
IUUC-Oin-079856	Oryza indica	52.02	0.00e+00	845.00
IUUC-Olo-080731	Oryza longistaminata	49.23	0.00e+00	841.00
IUUC-Ome-081762	Oryza meridionalis	45.59	0.00e+00	772.00
IUUC-Oni-082324	Oryza nivara	50.87	0.00e+00	849.00
IUUC-Opu-083400	Oryza punctata	50.92	0.00e+00	838.00
IUUC-Oru-084829	Oryza rufipogon	50.87	0.00e+00	849.00
IUUC-Osa-086026	Oryza sativa	51.62	0.00e+00	870.00
IUUC-Ola-087245	Oryzias latipes	47.74	0.00e+00	836.00
IUUC-Olu-087655	Ostreococcus lucimarinus	49.57	0.00e+00	862.00
IUUC-Oga-088163	Otolemur garnettii	46.53	0.00e+00	794.00
IUUC-Oar-089842	Ovis aries	48.33	0.00e+00	838.00
IUUC-Ptr-090501	Pan troglodytes	48.45	0.00e+00	838.00
IUUC-Pan-092011	Papio anubis	48.45	0.00e+00	838.00
IUUC-Psi-093308	Pelodiscus sinensis	48.04	0.00e+00	840.00
IUUC-Pma-094695	Petromyzon marinus	47.00	0.00e+00	761.00
IUUC-Pno-094785	Phaeosphaeria nodorum	50.52	4.00e-85	306.00
IUUC-Ppa-095911	Physcomitrella patens	47.61	0.00e+00	862.00
IUUC-Pfo-096587	Poecilia formosa	47.81	0.00e+00	841.00
IUUC-Pab-097926	Pongo abelii	45.46	0.00e+00	772.00
IUUC-Pop-099634	Populus trichocarpa	52.24	0.00e+00	877.00
IUUC-Pca-100965	Procavia capensis	47.77	0.00e+00	808.00
IUUC-Ppe-101470	Prunus persica	51.62	0.00e+00	869.00
IUUC-Pva-102451	Pteropus vampyrus	45.05	0.00e+00	626.00
IUUC-Pgr-103453	Puccinia graminis	43.31	0.00e+00	760.00
IUUC-Ptt-103868	Puccinia triticina	43.44	0.00e+00	768.00
IUUC-Pte-104274	Pyrenophora teres	46.48	0.00e+00	760.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	46.19	0.00e+00	722.00
IUUC-Rno-105979	Rattus norvegicus	41.33	3.00e-173	599.00
IUUC-Sce-106269	Saccharomyces cerevisiae	40.62	0.00e+00	656.00
IUUC-Sha-106905	Sarcophilus harrisii	48.21	0.00e+00	841.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	41.41	0.00e+00	681.00
IUUC-Spo-108299	Schizosaccharomyces pombe	41.13	0.00e+00	677.00
IUUC-Smo-108695	Selaginella moellendorffii	50.19	0.00e+00	837.00
IUUC-Sit-110239	Setaria italica	50.18	0.00e+00	876.00
IUUC-Sly-111525	Solanum lycopersicum	50.77	0.00e+00	880.00
IUUC-Stu-112906	Solanum tuberosum	51.99	0.00e+00	795.00
IUUC-Sar-113472	Sorex araneus	44.89	9.00e-167	577.00
IUUC-Sbi-113801	Sorghum bicolor	51.50	0.00e+00	862.00
IUUC-Sre-115040	Sporisorium reilianum	45.08	0.00e+00	756.00
IUUC-Ssc-115593	Sus scrofa	48.33	0.00e+00	838.00
IUUC-Tgu-117239	Taeniopygia guttata	48.40	0.00e+00	842.00
IUUC-Tru-118025	Takifugu rubripes	46.15	0.00e+00	839.00
IUUC-Tsy-118824	Tarsius syrichta	44.67	3.00e-166	575.00
IUUC-Tni-120142	Tetraodon nigroviridis	47.80	0.00e+00	828.00
IUUC-Tca-121613	Theobroma cacao	50.42	0.00e+00	873.00
IUUC-Tre-122072	Trichoderma reesei	44.58	0.00e+00	716.00
IUUC-Tvi-122546	Trichoderma virens	44.58	0.00e+00	713.00
IUUC-Tae-125292	Triticum aestivum	49.82	0.00e+00	872.00
IUUC-Tur-126283	Triticum urartu	44.98	0.00e+00	751.00
IUUC-Tme-127041	Tuber melanosporum	44.90	0.00e+00	747.00
IUUC-Tbe-127770	Tupaia belangeri	47.97	0.00e+00	681.00
IUUC-Ttr-129294	Tursiops truncatus	48.20	0.00e+00	835.00
IUUC-Uma-129351	Ustilago maydis	45.08	0.00e+00	758.00
IUUC-Vda-129716	Verticillium dahliae	44.58	0.00e+00	748.00
IUUC-Vpa-130037	Vicugna pacos	38.65	5.00e-92	330.00
IUUC-Vvi-131689	Vitis vinifera	49.59	0.00e+00	861.00
IUUC-Xtr-132633	Xenopus tropicalis	48.38	0.00e+00	838.00
IUUC-Xma-133347	Xiphophorus maculatus	48.05	0.00e+00	843.00
IUUC-Yli-134455	Yarrowia lipolytica	43.90	0.00e+00	693.00
IUUC-Zma-135706	Zea mays	51.50	0.00e+00	874.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence