iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	23720308

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS 60
QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV PGHSNGLPLF CRLVSVGSDL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCAATTGAAA ATACACTTTC CTTTTTTATT GTTCTAGAAG ACTTATCCCT CTATAAAGTA 60
GCCACACTCT TCTGTCTTCT CTCATCACCT CATTCATATC TCTCTCAACC TGAACATTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0880--Kelch repeat
KW-1185--Reference proteome
KW-0677--Repeat

Interpro

IPR015916--Gal_Oxidase_b-propeller
IPR006652--Kelch_1

SMART

SM00612--Kelch

Gene Ontology

GO:0005829--C:cytosol
GO:0019005--C:SCF ubiquitin ligase complex
GO:0031625--F:ubiquitin protein ligase binding
GO:0080037--P:negative regulation of cytokinin-activated signaling pathway
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:2000762--P:regulation of phenylpropanoid metabolic process
GO:0030162--P:regulation of proteolysis

KEGG

ath:AT1G15670

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002518	Amborella trichopoda	39.89	6.00e-69	253.00
IUUC-Aly-005798	Arabidopsis lyrata	91.92	0.00e+00	696.00
IUUC-Bol-015687	Brassica oleracea	81.06	1.00e-175	608.00
IUUC-Bra-016909	Brassica rapa	81.89	9.00e-175	605.00
IUUC-Mtr-058274	Medicago truncatula	50.70	3.00e-104	371.00
IUUC-Mac-065270	Musa acuminata	44.41	2.00e-83	301.00
IUUC-Oba-075850	Oryza barthii	37.63	1.00e-14	72.40
IUUC-Ogl-077502	Oryza glaberrima	37.89	2.00e-46	179.00
IUUC-Oin-079816	Oryza indica	37.89	3.00e-46	178.00
IUUC-Ome-081176	Oryza meridionalis	37.63	3.00e-55	208.00
IUUC-Oni-082714	Oryza nivara	37.89	2.00e-46	179.00
IUUC-Oru-084247	Oryza rufipogon	38.68	7.00e-50	190.00
IUUC-Osa-085360	Oryza sativa	37.89	2.00e-46	179.00
IUUC-Ppe-101539	Prunus persica	50.70	1.00e-101	362.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence