iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	8.40e-07	30.3	509	553

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf......kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iC++ +       d  +v+pC H+fh  Clq+w         +  CP+Cr
   Q: 509  CVICMTTIdlrhriND-CMVTPCEHIFHSGCLQRW------MDIKMECPTCR 553
           ****998888888666.889***************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MNNLGNFGVW GFGFFSLSIW FAVLQQANGL RPIRETARSW GDEWLFGKKE KGGAGPFSAW 60
NITGTYRGTW KFLDTVNSSS KFPDFRKESG NSVIELVTSP TKITGVHYVQ GAVVFHDVFD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCCAAGTTT CCACCTTTGT TCTCTCCAAA CATATATTAT ACTAATAGAT TAGAGAAGAA 60
CTCTATAAAG TTTTTAACTT TCTCCCCAAA CGAGGAATCT CAAAGTCAAT TGCTGTTCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0016874--F:ligase activity
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0009827--P:plant-type cell wall modification
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G20650

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000147	Aegilops tauschii	73.84	4.00e-83	300.00
IUUC-Atr-003038	Amborella trichopoda	71.90	0.00e+00	735.00
IUUC-Aly-006319	Arabidopsis lyrata	97.67	0.00e+00	1051.00
IUUC-Ago-007897	Ashbya gossypii	29.45	5.00e-36	145.00
IUUC-Bdi-014178	Brachypodium distachyon	72.20	0.00e+00	756.00
IUUC-Bra-017095	Brassica rapa	90.54	0.00e+00	984.00
IUUC-Mtr-057662	Medicago truncatula	77.11	0.00e+00	857.00
IUUC-Nfi-068252	Neosartorya fischeri	27.47	1.00e-23	104.00
IUUC-Ncr-068860	Neurospora crassa	60.61	2.00e-09	57.80
IUUC-Oba-075543	Oryza barthii	65.40	0.00e+00	636.00
IUUC-Obr-076427	Oryza brachyantha	72.76	0.00e+00	758.00
IUUC-Ogl-077281	Oryza glaberrima	72.31	0.00e+00	764.00
IUUC-Ogu-078135	Oryza glumaepatula	66.60	0.00e+00	640.00
IUUC-Oin-079565	Oryza indica	69.42	0.00e+00	718.00
IUUC-Olo-080765	Oryza longistaminata	59.42	9.00e-162	562.00
IUUC-Oni-082520	Oryza nivara	62.03	5.00e-132	463.00
IUUC-Oru-085261	Oryza rufipogon	65.60	0.00e+00	638.00
IUUC-Osa-085322	Oryza sativa	71.90	3.00e-175	607.00
IUUC-Ppa-095582	Physcomitrella patens	62.08	0.00e+00	674.00
IUUC-Pop-098911	Populus trichocarpa	79.07	0.00e+00	893.00
IUUC-Ppe-102081	Prunus persica	78.90	0.00e+00	905.00
IUUC-Sce-106438	Saccharomyces cerevisiae	28.07	6.00e-34	138.00
IUUC-Smo-109376	Selaginella moellendorffii	58.65	0.00e+00	631.00
IUUC-Sly-111887	Solanum lycopersicum	75.78	0.00e+00	865.00
IUUC-Sbi-114347	Sorghum bicolor	72.88	0.00e+00	746.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence