iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098902

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_1077376; POPTR_0005s07580g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s07580	POPTR_0005s07580.1	POPTR_0005s07580.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.00e-22	78.5	272	305
UBD/Beta-Prp	1.40e-40	140.5	147	395

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlr 31
           gHt+sv +l++  ++ + ++s+s Dg i +WD r
   Q: 272  GHTASVEDLQWssTEdHVFASCSVDGHIAIWDAR 305
           8**********96445779*************76 PP

UBD/Beta-Prp

   S: 54   e.....................vtavkfspdgkilvtgseDrtikvwdls.....................tgkcvhtlkghedsvlslsf 102
           e                     ++a++ +p+  i ++ s+ + +++wd+s                     +  ++  +kgh+d+ +++++
   Q: 147  EggsatpvlqlrkvahrgcinrIRAMTQNPH--ICASWSDAGYVQIWDFSthlnalaesetevprgassvfNQAPLFNFKGHKDEGYAIDW 235
           0555555666666666666666899999999..99999999************************************************** PP
   S: 103  spsg.dklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsf 188
           sp    +lv+G+  + i++w+  +g + +    +++gh+++v  +++++++  +++s+s D+ + +Wd + gk      ++h+ +v+ +s+
   Q: 236  SPRVaGRLVTGDCKNCIHLWESASGAKWNVdatPFTGHTASVEDLQWSSTEdHVFASCSVDGHIAIWDARLGKSPAIYFKAHNADVNVISW 326
           **656*******************998877799****************************************99999778*********9 PP
   S: 189  dsng.kelvsgsldgtvklwdlq...tgecvrtlnghtdnvksvrfspnderlvsgs.sDgsiriWdlr 252
           ++     l+sgs+dgt  + dl+    ++++  ++ h+ +++s++ sp++   +s+s sD+++ iWdl 
   Q: 327  NRLAsVMLASGSDDGTFSIRDLRllsPKSVLAHFQYHKHPITSIEWSPHEASTLSVSsSDNQLTIWDLS 395
           9976599******************98999******************99999999889*******975 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MVRSIKKPKK AKRKNKKGDE SSSSSSIPSM PTKVWQPGVD KLGEEEELEC DPTAYNSLHA 60
FHIGWPCLSF DVVRDSLGLL RTDFPHTVYF VAGTQAEKPD WNSIGIFKVS NVSGKQRELV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCAGCACCT CTTCGAGAAC CTTGAAGAAA GAAAAAAAAA AGGGGGAGCA AAAAAATGGT 60
CCGCAGCATA AAAAAACCGA AGAAGGCAAA GAGAAAGAAC AAGGTCTCCA TCAATTTCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

KEGG

pop:POPTR_0005s07580g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000677	Aegilops tauschii	63.33	2.00e-146	512.00
IUUC-Atr-002461	Amborella trichopoda	65.98	1.00e-162	565.00
IUUC-Aly-005405	Arabidopsis lyrata	73.48	0.00e+00	632.00
IUUC-Ath-007178	Arabidopsis thaliana	73.48	0.00e+00	638.00
IUUC-Ani-009465	Aspergillus nidulans	39.73	3.00e-75	275.00
IUUC-Bdi-014728	Brachypodium distachyon	66.89	1.00e-165	575.00
IUUC-Bol-015126	Brassica oleracea	71.13	0.00e+00	630.00
IUUC-Bra-017677	Brassica rapa	77.27	3.00e-76	277.00
IUUC-Dme-031676	Drosophila melanogaster	42.30	1.00e-91	329.00
IUUC-Gma-044177	Glycine max	77.30	0.00e+00	661.00
IUUC-Hvu-047721	Hordeum vulgare	63.78	5.00e-157	546.00
IUUC-Lpe-051388	Leersia perrieri	60.74	8.00e-140	489.00
IUUC-Mtr-057752	Medicago truncatula	76.85	0.00e+00	644.00
IUUC-Mac-065276	Musa acuminata	70.80	2.00e-169	588.00
IUUC-Oba-075093	Oryza barthii	63.72	5.00e-153	533.00
IUUC-Obr-076130	Oryza brachyantha	66.89	8.00e-166	576.00
IUUC-Ogl-077397	Oryza glaberrima	67.12	4.00e-166	577.00
IUUC-Ogu-078111	Oryza glumaepatula	63.90	4.00e-144	505.00
IUUC-Oin-079162	Oryza indica	64.17	8.00e-157	546.00
IUUC-Olo-080909	Oryza longistaminata	54.23	3.00e-141	494.00
IUUC-Ome-081768	Oryza meridionalis	61.70	3.00e-143	501.00
IUUC-Oni-082453	Oryza nivara	64.90	9.00e-155	540.00
IUUC-Opu-084133	Oryza punctata	62.97	2.00e-135	475.00
IUUC-Osa-085735	Oryza sativa	66.67	6.00e-165	573.00
IUUC-Psi-094092	Pelodiscus sinensis	40.19	4.00e-47	181.00
IUUC-Ppa-095849	Physcomitrella patens	57.52	1.00e-145	509.00
IUUC-Ppe-101997	Prunus persica	82.21	0.00e+00	684.00
IUUC-Pgr-103339	Puccinia graminis	40.22	4.00e-77	281.00
IUUC-Ptt-103937	Puccinia triticina	38.53	4.00e-75	275.00
IUUC-Sce-106330	Saccharomyces cerevisiae	37.53	5.00e-69	254.00
IUUC-Spo-108351	Schizosaccharomyces pombe	39.82	3.00e-82	298.00
IUUC-Smo-109619	Selaginella moellendorffii	53.03	4.00e-125	440.00
IUUC-Sit-110719	Setaria italica	66.74	8.00e-166	576.00
IUUC-Sly-111245	Solanum lycopersicum	70.42	2.00e-171	594.00
IUUC-Stu-112645	Solanum tuberosum	75.00	0.00e+00	642.00
IUUC-Sbi-114359	Sorghum bicolor	66.52	4.00e-166	577.00
IUUC-Tca-121710	Theobroma cacao	80.27	0.00e+00	691.00
IUUC-Tae-125820	Triticum aestivum	67.36	5.00e-163	566.00
IUUC-Tur-126135	Triticum urartu	62.83	2.00e-125	442.00
IUUC-Tme-127073	Tuber melanosporum	39.04	2.00e-71	263.00
IUUC-Vvi-131067	Vitis vinifera	81.00	0.00e+00	681.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence