iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgv 34
           H ++v+ +++   +++l+sG+dDgt+kvWDlr+++
   Q: 404  HDGDVNVISWsrREPFLLSGGDDGTLKVWDLRQFK 438
           99********97669****************9876 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MERSLDSRTP IELQLPEGLA TAARKNFQDH TKDKTAPNTS FLTELGPLLG SAISLRITFL 60
LLVHRFPRQQ YSGTGLRLWE ADPGSDASTS RPKQEGSKMA ARKGRRHTCE TGEPMEAETY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCCTGTCTA CCCTAAAGCA TTTTGAAATA ATTTAAAGCC ATCATAACAA GGAAAGGAGA 60
AGAAATCGGC CTTAAAGGTC CTCGGGGAAC AGAAACCCAG TCTCCTTGCC AGTAAGTGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005730--C:nucleolus
GO:0003682--F:chromatin binding
GO:0003688--F:DNA replication origin binding
GO:0003723--F:RNA binding
GO:0006260--P:DNA replication
GO:0006334--P:nucleosome assembly
GO:0006337--P:nucleosome disassembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000677	Aegilops tauschii	41.38	5.00e-76	278.00
IUUC-Aml-002309	Ailuropoda melanoleuca	91.05	0.00e+00	827.00
IUUC-Atr-002461	Amborella trichopoda	46.08	1.00e-94	340.00
IUUC-Aca-004760	Anolis carolinensis	72.77	7.00e-175	606.00
IUUC-Aly-005405	Arabidopsis lyrata	42.37	1.00e-86	313.00
IUUC-Ath-007178	Arabidopsis thaliana	42.73	8.00e-88	317.00
IUUC-Ago-007735	Ashbya gossypii	35.98	1.00e-68	254.00
IUUC-Acl-008294	Aspergillus clavatus	41.78	1.00e-80	293.00
IUUC-Afl-008486	Aspergillus flavus	41.28	3.00e-78	285.00
IUUC-Afu-009019	Aspergillus fumigatus	41.32	4.00e-81	295.00
IUUC-Ani-009465	Aspergillus nidulans	40.92	2.00e-77	283.00
IUUC-Ang-009641	Aspergillus niger	40.69	8.00e-77	281.00
IUUC-Ate-010426	Aspergillus terreus	41.10	8.00e-80	291.00
IUUC-Ame-010856	Astyanax mexicanus	61.94	3.00e-149	521.00
IUUC-Bgr-012258	Blumeria graminis	38.34	8.00e-64	237.00
IUUC-Bta-012437	Bos taurus	91.26	0.00e+00	823.00
IUUC-Bci-013647	Botrytis cinerea	41.01	2.00e-76	279.00
IUUC-Bdi-014728	Brachypodium distachyon	45.06	4.00e-95	342.00
IUUC-Bol-015601	Brassica oleracea	41.76	4.00e-84	305.00
IUUC-Bra-016700	Brassica rapa	46.04	1.00e-42	166.00
IUUC-Cel-018454	Caenorhabditis elegans	43.74	3.00e-105	375.00
IUUC-Cja-018859	Callithrix jacchus	90.79	0.00e+00	816.00
IUUC-Cfa-020912	Canis familiaris	91.69	0.00e+00	823.00
IUUC-Cpo-021368	Cavia porcellus	91.24	0.00e+00	817.00
IUUC-Cre-022850	Chlamydomonas reinhardtii	48.58	2.00e-50	193.00
IUUC-Csa-023599	Chlorocebus sabaeus	91.48	0.00e+00	831.00
IUUC-Cin-025718	Ciona intestinalis	56.35	1.00e-140	493.00
IUUC-Csv-025806	Ciona savignyi	58.09	1.00e-107	382.00
IUUC-Cgl-026766	Colletotrichum gloeosporioides	39.95	4.00e-65	241.00
IUUC-Cne-026781	Cryptococcus neoformans	43.88	2.00e-86	312.00
IUUC-Cme-027129	Cyanidioschyzon merolae	34.99	4.00e-44	172.00
IUUC-Dre-028225	Danio rerio	62.80	6.00e-153	533.00
IUUC-Dno-029792	Dasypus novemcinctus	89.58	0.00e+00	797.00
IUUC-Dor-030773	Dipodomys ordii	90.65	3.00e-108	385.00
IUUC-Dse-031289	Dothistroma septosporum	42.73	1.00e-77	283.00
IUUC-Dme-031676	Drosophila melanogaster	49.78	1.00e-131	462.00
IUUC-Ete-033042	Echinops telfairi	84.52	3.00e-67	249.00
IUUC-Eca-033618	Equus caballus	92.81	0.00e+00	807.00
IUUC-Fca-036102	Felis catus	91.52	0.00e+00	825.00
IUUC-Fox-037899	Fusarium oxysporum	40.31	1.00e-80	293.00
IUUC-Fso-038130	Fusarium solani	41.89	4.00e-81	295.00
IUUC-Gmo-038741	Gadus morhua	62.02	3.00e-149	521.00
IUUC-Ggr-040086	Gaeumannomyces graminis	39.65	6.00e-77	281.00
IUUC-Gac-042243	Gasterosteus aculeatus	60.91	1.00e-148	519.00
IUUC-Gma-044177	Glycine max	43.69	2.00e-89	323.00
IUUC-Ggo-044564	Gorilla gorilla	92.36	0.00e+00	835.00
IUUC-Hsa-046021	Homo sapiens	91.26	0.00e+00	830.00
IUUC-Hvu-047721	Hordeum vulgare	43.38	4.00e-90	325.00
IUUC-Itr-048189	Ictidomys tridecemlineatus	93.03	0.00e+00	833.00
IUUC-Kpa-049271	Komagataella pastoris	38.26	7.00e-71	261.00
IUUC-Lch-049974	Latimeria chalumnae	64.12	2.00e-164	571.00
IUUC-Lpe-051388	Leersia perrieri	41.90	1.00e-72	267.00
IUUC-Lma-053010	Leptosphaeria maculans	39.54	7.00e-73	268.00
IUUC-Laf-054058	Loxodonta africana	91.93	0.00e+00	833.00
IUUC-Mcc-055246	Macaca mulatta	91.03	0.00e+00	827.00
IUUC-Meu-056795	Macropus eugenii	78.35	0.00e+00	677.00
IUUC-Mor-057175	Magnaporthe oryzae	40.32	4.00e-77	282.00
IUUC-Mpo-057388	Magnaporthe poae	37.82	8.00e-62	231.00
IUUC-Mtr-057752	Medicago truncatula	43.32	1.00e-85	310.00
IUUC-Mla-058904	Melampsora laricipopulina	40.84	2.00e-81	296.00
IUUC-Mvi-060525	Microbotryum violaceum	41.01	1.00e-74	273.00
IUUC-Mmr-060905	Microcebus murinus	91.70	0.00e+00	830.00
IUUC-Mmu-063428	Mus musculus	94.84	0.00e+00	856.00
IUUC-Mac-065276	Musa acuminata	44.63	2.00e-88	319.00
IUUC-Mpu-066062	Mustela putorius furo	92.17	0.00e+00	835.00
IUUC-Mlu-068115	Myotis lucifugus	94.55	2.00e-122	431.00
IUUC-Nfi-068512	Neosartorya fischeri	41.32	8.00e-78	284.00
IUUC-Ncr-068629	Neurospora crassa	39.41	1.00e-76	280.00
IUUC-Nle-070016	Nomascus leucogenys	86.77	0.00e+00	772.00
IUUC-Ont-072230	Oreochromis niloticus	62.59	1.00e-149	523.00
IUUC-Oan-072759	Ornithorhynchus anatinus	29.10	1.00e-48	187.00
IUUC-Ocu-074511	Oryctolagus cuniculus	91.28	0.00e+00	797.00
IUUC-Oba-075093	Oryza barthii	43.39	4.00e-85	308.00
IUUC-Obr-076130	Oryza brachyantha	43.72	5.00e-93	335.00
IUUC-Ogl-077167	Oryza glaberrima	45.71	2.00e-94	339.00
IUUC-Ogu-078111	Oryza glumaepatula	42.96	6.00e-80	293.00
IUUC-Oin-079564	Oryza indica	43.44	4.00e-85	308.00
IUUC-Olo-080909	Oryza longistaminata	37.40	5.00e-58	218.00
IUUC-Ome-081768	Oryza meridionalis	43.77	9.00e-82	298.00
IUUC-Oni-082453	Oryza nivara	43.91	4.00e-85	309.00
IUUC-Opu-084133	Oryza punctata	42.24	4.00e-73	269.00
IUUC-Oru-085056	Oryza rufipogon	42.15	3.00e-68	252.00
IUUC-Osa-085735	Oryza sativa	45.60	5.00e-94	338.00
IUUC-Ola-087066	Oryzias latipes	60.36	3.00e-148	518.00
IUUC-Olu-087594	Ostreococcus lucimarinus	41.08	8.00e-74	270.00
IUUC-Oga-087974	Otolemur garnettii	91.01	0.00e+00	822.00
IUUC-Oar-089902	Ovis aries	91.70	0.00e+00	830.00
IUUC-Ptr-090469	Pan troglodytes	85.84	0.00e+00	777.00
IUUC-Pan-092858	Papio anubis	91.48	0.00e+00	832.00
IUUC-Psi-094092	Pelodiscus sinensis	58.31	2.00e-98	352.00
IUUC-Pno-094919	Phaeosphaeria nodorum	39.05	1.00e-65	244.00
IUUC-Ppa-095849	Physcomitrella patens	42.79	7.00e-94	337.00
IUUC-Pfo-096535	Poecilia formosa	62.86	6.00e-149	520.00
IUUC-Pab-098478	Pongo abelii	91.26	0.00e+00	831.00
IUUC-Pop-100032	Populus trichocarpa	45.37	7.00e-92	330.00
IUUC-Pca-100403	Procavia capensis	93.45	3.00e-164	570.00
IUUC-Ppe-101997	Prunus persica	45.98	1.00e-95	343.00
IUUC-Pva-102423	Pteropus vampyrus	91.69	0.00e+00	823.00
IUUC-Pgr-103339	Puccinia graminis	42.51	2.00e-84	306.00
IUUC-Ptt-103937	Puccinia triticina	41.29	5.00e-82	298.00
IUUC-Pte-104051	Pyrenophora teres	40.69	3.00e-71	262.00
IUUC-Pyt-104644	Pyrenophora triticirepentis	40.46	1.00e-71	263.00
IUUC-Sce-106330	Saccharomyces cerevisiae	36.96	8.00e-65	241.00
IUUC-Sha-106564	Sarcophilus harrisii	75.58	2.00e-157	548.00
IUUC-Sja-107969	Schizosaccharomyces japonicus	41.26	8.00e-86	310.00
IUUC-Spo-108351	Schizosaccharomyces pombe	40.05	5.00e-83	301.00
IUUC-Ssl-108452	Sclerotinia sclerotiorum	41.47	3.00e-77	282.00
IUUC-Smo-109619	Selaginella moellendorffii	41.78	6.00e-88	317.00
IUUC-Sit-110719	Setaria italica	44.93	1.00e-88	320.00
IUUC-Sly-111245	Solanum lycopersicum	43.28	1.00e-86	313.00
IUUC-Stu-112645	Solanum tuberosum	43.85	2.00e-93	335.00
IUUC-Sar-113342	Sorex araneus	86.36	0.00e+00	731.00
IUUC-Sbi-114359	Sorghum bicolor	44.47	1.00e-89	323.00
IUUC-Sre-115098	Sporisorium reilianum	44.72	7.00e-90	324.00
IUUC-Ssc-115496	Sus scrofa	94.16	0.00e+00	847.00
IUUC-Tru-117662	Takifugu rubripes	63.46	6.00e-147	513.00
IUUC-Tni-120564	Tetraodon nigroviridis	63.33	9.00e-129	452.00
IUUC-Tca-121710	Theobroma cacao	44.91	6.00e-92	331.00
IUUC-Tre-122239	Trichoderma reesei	43.22	3.00e-81	295.00
IUUC-Tvi-122589	Trichoderma virens	42.99	2.00e-81	296.00
IUUC-Tae-124597	Triticum aestivum	45.21	5.00e-96	344.00
IUUC-Tur-126135	Triticum urartu	46.52	2.00e-75	277.00
IUUC-Tme-127073	Tuber melanosporum	38.73	4.00e-61	228.00
IUUC-Ttr-128383	Tursiops truncatus	89.46	0.00e+00	795.00
IUUC-Uma-129345	Ustilago maydis	45.41	2.00e-93	336.00
IUUC-Vda-129893	Verticillium dahliae	41.26	8.00e-80	291.00
IUUC-Vvi-131067	Vitis vinifera	43.58	1.00e-89	323.00
IUUC-Xtr-132603	Xenopus tropicalis	70.64	0.00e+00	626.00
IUUC-Xma-133149	Xiphophorus maculatus	64.51	3.00e-151	528.00
IUUC-Yli-134459	Yarrowia lipolytica	38.35	1.00e-64	240.00
IUUC-Zma-135548	Zea mays	43.78	3.00e-88	318.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence