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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007371
UUCD1 version UUC-ArT-00225
Ensembl Protein ID AT5G60170.2
UniProt Accession F4JXH7; F4JXH7_ARATH
Genbank Protein ID AED97289.1
Protein Name RNA binding (RRM/RBD/RNP motifs) family protein
Genbank Nucleotide ID CP002688
Gene Name At5g60170; F15L12.6; F15L12_6
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G60170 AT5G60170.1 AT5G60170.1
AT5G60170 AT5G60170.2 AT5G60170.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 38.95 4.00e-51 198.00 IUUC-Sce-106312
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MSDHGEKTCP LCAEEMDLTD QQLKPCKCGY QICVWCWHHI VDMAEKDQIE GRCPACRTPY 60
DKEKIVGMTV NCDSLASEGN MERKKIQKSK SKSSEGRKQQ LTSVRVIQRN LVYIVGLPLN 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007371|E3,RING|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CATCGCCTCA AAAATCACAG CCATCCATTT TCTCTTTCTC TCTCTCTCTG TAGCTCTCTC 60
TCGTTCGAGC TTCCATTTTT CCTCATCGCA ATCTTCATCT TCAATCTCCA GCTATCTCAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007371|E3,RING|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0694--RNA-binding
Interpro

IPR034261--CNOT4_RRM
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR003954--RRM_dom_euk
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50102--RRM
PS50089--ZF_RING_2
Pfam

PF00076--RRM_1
SMART

SM00361--RRM_1
Gene Ontology

GO:0030014--C:CCR4-NOT complex
GO:0000166--F:nucleotide binding
GO:0003723--F:RNA binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
KEGG ath:AT5G60170
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000464 Aegilops tauschii 61.04 2.00e-111 397.00
IUUC-Aml-002384 Ailuropoda melanoleuca 41.73 5.00e-53 202.00
IUUC-Atr-002462 Amborella trichopoda 68.05 5.00e-123 435.00
IUUC-Apl-003756 Anas platyrhynchos 41.73 5.00e-54 205.00
IUUC-Aca-004643 Anolis carolinensis 42.98 8.00e-54 204.00
IUUC-Aly-006093 Arabidopsis lyrata 60.79 2.00e-127 449.00
IUUC-Ago-007799 Ashbya gossypii 40.42 6.00e-50 191.00
IUUC-Acl-008077 Aspergillus clavatus 38.62 4.00e-42 166.00
IUUC-Afl-008720 Aspergillus flavus 35.28 3.00e-48 187.00
IUUC-Afu-008905 Aspergillus fumigatus 39.17 5.00e-42 166.00
IUUC-Ani-009264 Aspergillus nidulans 33.33 2.00e-29 123.00
IUUC-Ang-009537 Aspergillus niger 35.19 4.00e-48 186.00
IUUC-Aor-010123 Aspergillus oryzae 34.67 2.00e-30 128.00
IUUC-Ate-010409 Aspergillus terreus 33.82 4.00e-46 180.00
IUUC-Ame-011538 Astyanax mexicanus 42.13 1.00e-44 174.00
IUUC-Bgr-012062 Blumeria graminis 33.95 2.00e-50 194.00
IUUC-Bta-012419 Bos taurus 41.73 9.00e-54 204.00
IUUC-Bci-013633 Botrytis cinerea 38.27 4.00e-48 186.00
IUUC-Bdi-014913 Brachypodium distachyon 60.78 3.00e-110 392.00
IUUC-Bol-016407 Brassica oleracea 75.80 0.00e+00 1407.00
IUUC-Bra-017755 Brassica rapa 77.78 0.00e+00 1466.00
IUUC-Cel-018123 Caenorhabditis elegans 40.71 2.00e-48 186.00
IUUC-Cja-019705 Callithrix jacchus 41.73 8.00e-54 204.00
IUUC-Cfa-020440 Canis familiaris 41.73 8.00e-54 204.00
IUUC-Cpo-022091 Cavia porcellus 38.58 8.00e-52 197.00
IUUC-Csa-024202 Chlorocebus sabaeus 41.73 1.00e-53 203.00
IUUC-Cho-024410 Choloepus hoffmanni 42.31 5.00e-36 145.00
IUUC-Cin-025558 Ciona intestinalis 41.26 2.00e-50 192.00
IUUC-Cgl-026687 Colletotrichum gloeosporioides 38.93 5.00e-50 192.00
IUUC-Cne-027084 Cryptococcus neoformans 32.48 6.00e-44 172.00
IUUC-Cme-027148 Cyanidioschyzon merolae 27.75 2.00e-20 93.20
IUUC-Dre-028377 Danio rerio 42.55 3.00e-45 176.00
IUUC-Dno-029100 Dasypus novemcinctus 41.73 6.00e-54 204.00
IUUC-Dor-030310 Dipodomys ordii 44.39 7.00e-48 184.00
IUUC-Dse-031514 Dothistroma septosporum 38.06 7.00e-46 178.00
IUUC-Dme-031735 Drosophila melanogaster 42.67 3.00e-47 183.00
IUUC-Ete-033091 Echinops telfairi 38.98 3.00e-47 182.00
IUUC-Eca-033506 Equus caballus 41.73 1.00e-53 203.00
IUUC-Eeu-034506 Erinaceus europaeus 38.58 8.00e-46 177.00
IUUC-Fca-036033 Felis catus 41.73 1.00e-53 203.00
IUUC-Fal-037540 Ficedula albicollis 41.73 3.00e-54 206.00
IUUC-Fox-037944 Fusarium oxysporum 41.74 3.00e-52 199.00
IUUC-Fso-038172 Fusarium solani 38.17 9.00e-46 179.00
IUUC-Gmo-039211 Gadus morhua 41.70 5.00e-44 172.00
IUUC-Ggr-040096 Gaeumannomyces graminis 40.82 3.00e-52 200.00
IUUC-Gga-040487 Gallus gallus 41.73 3.00e-54 206.00
IUUC-Gac-042294 Gasterosteus aculeatus 41.70 1.00e-43 171.00
IUUC-Gma-043229 Glycine max 44.46 0.00e+00 730.00
IUUC-Ggo-044950 Gorilla gorilla 39.90 1.00e-37 150.00
IUUC-Hsa-046666 Homo sapiens 41.73 2.00e-53 202.00
IUUC-Hvu-047405 Hordeum vulgare 59.59 3.00e-112 399.00
IUUC-Itr-047888 Ictidomys tridecemlineatus 41.73 6.00e-51 193.00
IUUC-Kpa-049260 Komagataella pastoris 30.13 5.00e-50 191.00
IUUC-Lch-050203 Latimeria chalumnae 41.73 4.00e-54 205.00
IUUC-Lpe-051195 Leersia perrieri 63.14 2.00e-107 383.00
IUUC-Loc-052886 Lepisosteus oculatus 42.98 1.00e-45 177.00
IUUC-Lma-053073 Leptosphaeria maculans 37.87 5.00e-44 172.00
IUUC-Laf-053490 Loxodonta africana 41.73 8.00e-54 204.00
IUUC-Mcc-055724 Macaca mulatta 41.73 1.00e-53 204.00
IUUC-Meu-056787 Macropus eugenii 43.59 8.00e-21 95.10
IUUC-Mor-056921 Magnaporthe oryzae 40.82 6.00e-50 191.00
IUUC-Mpo-057616 Magnaporthe poae 40.82 1.00e-51 197.00
IUUC-Mtr-058426 Medicago truncatula 45.51 0.00e+00 745.00
IUUC-Mla-059146 Melampsora laricipopulina 35.60 2.00e-41 164.00
IUUC-Mga-059372 Meleagris gallopavo 41.73 5.00e-54 205.00
IUUC-Mvi-060479 Microbotryum violaceum 37.27 3.00e-34 140.00
IUUC-Mmr-061012 Microcebus murinus 41.73 8.00e-54 204.00
IUUC-Mdo-062330 Monodelphis domestica 41.73 5.00e-54 205.00
IUUC-Mmu-063894 Mus musculus 41.73 8.00e-54 204.00
IUUC-Mac-064805 Musa acuminata 64.29 8.00e-96 343.00
IUUC-Mpu-066894 Mustela putorius furo 41.73 8.00e-54 204.00
IUUC-Mlu-067321 Myotis lucifugus 41.73 1.00e-53 204.00
IUUC-Nfi-068451 Neosartorya fischeri 39.02 1.00e-42 168.00
IUUC-Ncr-068667 Neurospora crassa 32.39 1.00e-53 205.00
IUUC-Nle-070058 Nomascus leucogenys 41.34 6.00e-50 191.00
IUUC-Opr-071108 Ochotona princeps 46.23 2.00e-25 110.00
IUUC-Ont-071541 Oreochromis niloticus 42.13 3.00e-44 172.00
IUUC-Oan-073232 Ornithorhynchus anatinus 41.73 5.00e-54 205.00
IUUC-Ocu-074893 Oryctolagus cuniculus 41.73 1.00e-53 204.00
IUUC-Oba-075623 Oryza barthii 61.31 5.00e-57 214.00
IUUC-Obr-076653 Oryza brachyantha 59.82 1.00e-111 397.00
IUUC-Ogl-077946 Oryza glaberrima 65.71 7.00e-84 302.00
IUUC-Ogu-078775 Oryza glumaepatula 62.98 9.00e-106 375.00
IUUC-Oin-079214 Oryza indica 60.24 1.00e-112 400.00
IUUC-Olo-080799 Oryza longistaminata 50.67 5.00e-59 219.00
IUUC-Ome-081843 Oryza meridionalis 57.71 6.00e-108 384.00
IUUC-Oni-082944 Oryza nivara 61.31 4.00e-59 220.00
IUUC-Opu-083668 Oryza punctata 59.64 8.00e-112 397.00
IUUC-Oru-084249 Oryza rufipogon 43.43 8.00e-59 221.00
IUUC-Osa-086233 Oryza sativa 60.24 1.00e-112 400.00
IUUC-Ola-087121 Oryzias latipes 40.48 3.00e-44 172.00
IUUC-Olu-087772 Ostreococcus lucimarinus 39.81 3.00e-41 160.00
IUUC-Oga-088556 Otolemur garnettii 41.73 8.00e-54 204.00
IUUC-Oar-089768 Ovis aries 41.73 9.00e-54 204.00
IUUC-Ptr-090585 Pan troglodytes 41.73 1.00e-53 204.00
IUUC-Pan-092625 Papio anubis 41.73 1.00e-53 204.00
IUUC-Psi-093462 Pelodiscus sinensis 42.98 1.00e-53 204.00
IUUC-Pma-094468 Petromyzon marinus 42.98 5.00e-43 169.00
IUUC-Pno-094812 Phaeosphaeria nodorum 29.58 5.00e-21 97.10
IUUC-Pfo-096762 Poecilia formosa 39.85 2.00e-44 173.00
IUUC-Pab-097890 Pongo abelii 41.73 1.00e-53 203.00
IUUC-Pop-099764 Populus trichocarpa 48.77 0.00e+00 803.00
IUUC-Pca-101121 Procavia capensis 39.22 2.00e-32 133.00
IUUC-Ppe-102076 Prunus persica 47.76 0.00e+00 795.00
IUUC-Pva-102489 Pteropus vampyrus 41.73 5.00e-53 202.00
IUUC-Pgr-103568 Puccinia graminis 31.55 4.00e-39 156.00
IUUC-Ptt-103721 Puccinia triticina 29.33 4.00e-20 93.20
IUUC-Pte-104118 Pyrenophora teres 38.30 1.00e-48 187.00
IUUC-Pyt-104612 Pyrenophora triticirepentis 32.35 4.00e-49 189.00
IUUC-Rno-105627 Rattus norvegicus 41.73 1.00e-53 204.00
IUUC-Sce-106312 Saccharomyces cerevisiae 38.58 2.00e-49 189.00
IUUC-Sha-106619 Sarcophilus harrisii 41.73 6.00e-54 204.00
IUUC-Sja-107765 Schizosaccharomyces japonicus 41.67 2.00e-48 186.00
IUUC-Spo-108328 Schizosaccharomyces pombe 38.82 9.00e-49 187.00
IUUC-Ssl-108577 Sclerotinia sclerotiorum 39.09 1.00e-44 174.00
IUUC-Smo-108760 Selaginella moellendorffii 56.77 7.00e-79 285.00
IUUC-Sit-109923 Setaria italica 57.23 2.00e-109 389.00
IUUC-Sly-110900 Solanum lycopersicum 62.55 2.00e-106 379.00
IUUC-Stu-112226 Solanum tuberosum 62.92 4.00e-107 381.00
IUUC-Sar-113620 Sorex araneus 41.73 6.00e-52 198.00
IUUC-Sbi-114318 Sorghum bicolor 58.19 2.00e-112 400.00
IUUC-Sre-114956 Sporisorium reilianum 43.67 5.00e-54 206.00
IUUC-Ssc-116116 Sus scrofa 41.73 4.00e-51 194.00
IUUC-Tgu-117357 Taeniopygia guttata 41.73 3.00e-54 206.00
IUUC-Tru-118759 Takifugu rubripes 42.13 6.00e-44 171.00
IUUC-Tsy-119387 Tarsius syrichta 41.73 7.00e-53 201.00
IUUC-Tni-120536 Tetraodon nigroviridis 39.57 1.00e-43 171.00
IUUC-Tca-121035 Theobroma cacao 66.41 4.00e-148 518.00
IUUC-Tre-121996 Trichoderma reesei 33.65 5.00e-44 173.00
IUUC-Tvi-122371 Trichoderma virens 38.28 1.00e-51 198.00
IUUC-Tae-124373 Triticum aestivum 61.04 9.00e-112 397.00
IUUC-Tur-126324 Triticum urartu 61.04 8.00e-112 397.00
IUUC-Tme-127072 Tuber melanosporum 34.78 4.00e-38 153.00
IUUC-Tbe-128107 Tupaia belangeri 38.98 2.00e-49 189.00
IUUC-Ttr-128846 Tursiops truncatus 41.73 1.00e-52 201.00
IUUC-Uma-129607 Ustilago maydis 43.67 7.00e-54 205.00
IUUC-Vda-129971 Verticillium dahliae 37.73 1.00e-39 159.00
IUUC-Vpa-130298 Vicugna pacos 37.40 1.00e-41 164.00
IUUC-Vvi-131651 Vitis vinifera 49.09 0.00e+00 851.00
IUUC-Xtr-132728 Xenopus tropicalis 41.73 1.00e-53 203.00
IUUC-Xma-133789 Xiphophorus maculatus 39.85 3.00e-44 173.00
IUUC-Yli-134461 Yarrowia lipolytica 39.11 2.00e-44 172.00
IUUC-Zma-135031 Zea mays 58.02 3.00e-110 392.00
Created Date 25-Jun-2017

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