iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099278

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_424285; POPTR_0005s11670g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s11670	POPTR_0005s11670.1	POPTR_0005s11670.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-18	66.7	12	45

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf..sdtllvsGsdDgtikvWDlrtgvl 35
           +++++++f  ++ +lv++sdD +i+++D+    +
   Q: 12   GRISSMDFhkTSSYLVTASDDESIRLYDVAGAAC 45
           7899****97449***************966555 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

METGMVFRDY NGRISSMDFH KTSSYLVTAS DDESIRLYDV AGAACLKAIN SKKYGVDLVC 60
FTSDPTTVLY SSKNGWDESL RLLSLNDNKY LRYFKGHHDR VVSLSLCSRK ECFISGSLDR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCTGTTCAT CGAAGCTTGA CACATTTTCT TGTTCAAAAT CTCAAATTTA CCAGTTAAAA 60
TTCATTAACA ATGGTTGGTA CGTATTCAAT TTTATCTTCT TCCTAATCTC ATCCTCACTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0048188--C:Set1C/COMPASS complex
GO:0003682--F:chromatin binding
GO:0080182--P:histone H3-K4 trimethylation
GO:0009827--P:plant-type cell wall modification

KEGG

pop:POPTR_0005s11670g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000390	Aegilops tauschii	72.90	6.00e-137	479.00
IUUC-Atr-002607	Amborella trichopoda	79.61	6.00e-147	512.00
IUUC-Aly-005462	Arabidopsis lyrata	82.85	2.00e-152	531.00
IUUC-Ath-006609	Arabidopsis thaliana	82.20	2.00e-151	527.00
IUUC-Bdi-014222	Brachypodium distachyon	72.26	2.00e-134	471.00
IUUC-Bol-015485	Brassica oleracea	81.03	3.00e-148	516.00
IUUC-Bra-016914	Brassica rapa	81.35	1.00e-147	515.00
IUUC-Gma-044060	Glycine max	85.85	3.00e-161	560.00
IUUC-Hvu-047690	Hordeum vulgare	72.58	2.00e-136	478.00
IUUC-Lpe-050812	Leersia perrieri	70.65	2.00e-129	454.00
IUUC-Mtr-058607	Medicago truncatula	83.28	1.00e-155	541.00
IUUC-Mac-064497	Musa acuminata	79.61	1.00e-145	508.00
IUUC-Oba-075229	Oryza barthii	71.29	5.00e-131	460.00
IUUC-Obr-076490	Oryza brachyantha	72.88	3.00e-132	464.00
IUUC-Ogl-077381	Oryza glaberrima	71.38	5.00e-130	456.00
IUUC-Ogu-078068	Oryza glumaepatula	72.22	3.00e-131	460.00
IUUC-Oin-079415	Oryza indica	71.61	5.00e-131	460.00
IUUC-Olo-080773	Oryza longistaminata	62.09	3.00e-107	380.00
IUUC-Ome-081277	Oryza meridionalis	59.03	8.00e-98	349.00
IUUC-Oni-082990	Oryza nivara	71.61	2.00e-131	461.00
IUUC-Opu-083374	Oryza punctata	71.29	2.00e-131	461.00
IUUC-Oru-084354	Oryza rufipogon	71.61	2.00e-131	461.00
IUUC-Osa-086154	Oryza sativa	71.61	3.00e-131	460.00
IUUC-Olu-087603	Ostreococcus lucimarinus	36.86	5.00e-53	200.00
IUUC-Ppe-101860	Prunus persica	87.06	9.00e-164	568.00
IUUC-Sit-110657	Setaria italica	71.61	2.00e-134	471.00
IUUC-Sly-110867	Solanum lycopersicum	86.08	4.00e-159	553.00
IUUC-Sbi-114094	Sorghum bicolor	73.29	6.00e-136	476.00
IUUC-Tsy-119314	Tarsius syrichta	30.12	2.00e-31	128.00
IUUC-Tca-121499	Theobroma cacao	84.16	2.00e-164	572.00
IUUC-Tae-124058	Triticum aestivum	73.23	2.00e-137	481.00
IUUC-Tur-126512	Triticum urartu	75.29	3.00e-119	421.00
IUUC-Tbe-127310	Tupaia belangeri	35.38	3.00e-20	92.00
IUUC-Vvi-131040	Vitis vinifera	89.64	9.00e-169	585.00
IUUC-Yli-134509	Yarrowia lipolytica	32.14	5.00e-43	167.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence