iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Smo-109582

Ensembl Protein ID

EFJ16853

UniProt Accession

D8SFK2; D8SFK2_SELML

Genbank Protein ID

EFJ16853.1

Protein Name

Coatomer subunit alpha

Genbank Nucleotide ID

GL377617

Gene Name

SELMODRAFT_154977

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_154977	EFJ16853	EFJ16853

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-38	130.1	50	86
UBD/Beta-Prp	1.40e-78	264.8	3	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H ++v++++f  s +l+vsG+dD +ikvW+++t ++l
   Q: 50   HDGPVRGVHFhrSQPLFVSGGDDYKIKVWNYKTRRCL 86
           99*********544*****************999997 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           t +++++++++ + f+p +++++++  +g i++wd+++g+l+ ++ +h+++v+ v f+++++++v+g++D+ ikvw+++t+ c+ tl gh d++++++f++
   Q: 3    TKFETKSNRVKGLSFHPRRPWILASLHSGVIQLWDYRMGSLIDRFDEHDGPVRGVHFHRSQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYIRTVQFHQ 103
           67889999********************************************************************************************* PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl...........................ktgkllrtltgg 178
           +  ++vs+s+d+tir+w++++++c++ +l+gh++ v+c+++h +++l+vs+slD+tvr+Wd+                             + + + l+g 
   Q: 104  EYPWIVSASDDQTIRIWNWQSRTCIS-VLTGHNHYVMCASFHVKEDLVVSASLDQTVRVWDIsalrkktvspaedllrltqmnsdlfggGDAVVKYVLEG- 202
           **************************.****************************************999999999977777777765434444444466. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgd 277
           h++ v++ sf+++ + +vsg++d++vklw +  ++   v+tl+gh +nv++v f+ +++++vs s+D++iriWd+ ++  ++t+ +++++++  ++ +++ 
   Q: 203  HDRGVNWASFHPSLPLIVSGADDRQVKLWRMNDTKAweVDTLRGHVNNVSCVMFHARQDIIVSNSEDKTIRIWDMSKRSGVHTFRREHDRFWILSG-HPEM 302
           ********************************777668**********************************************************.6666 PP
   S: 278  nvlvlgsedskvniwklkknep 299
           n l++g  ds   ++kl++++p
   Q: 303  NLLAAG-HDSGMIVFKLERERP 323
           655555.689999999988765 PP

Organism

Selaginella moellendorffii

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MLTKFETKSN RVKGLSFHPR RPWILASLHS GVIQLWDYRM GSLIDRFDEH DGPVRGVHFH 60
RSQPLFVSGG DDYKIKVWNY KTRRCLFTLL GHLDYIRTVQ FHQEYPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTGACGA AATTCGAGAC CAAGAGCAAT CGCGTCAAGG GGTTGAGCTT CCATCCCCGG 60
CGGCCATGGA TCTTGGCTAG TCTCCACAGC GGCGTCATCC AGCTATGGGA TTACCGGATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

KEGG

smo:SELMODRAFT_154977

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000064	Aegilops tauschii	67.08	0.00e+00	1722.00
IUUC-Aml-001758	Ailuropoda melanoleuca	55.13	0.00e+00	1379.00
IUUC-Atr-002493	Amborella trichopoda	68.94	0.00e+00	1750.00
IUUC-Apl-003385	Anas platyrhynchos	50.74	0.00e+00	1063.00
IUUC-Aca-005154	Anolis carolinensis	78.92	1.00e-95	341.00
IUUC-Aly-006020	Arabidopsis lyrata	68.90	0.00e+00	1723.00
IUUC-Ago-007992	Ashbya gossypii	43.30	0.00e+00	969.00
IUUC-Acl-008027	Aspergillus clavatus	57.11	0.00e+00	1006.00
IUUC-Afl-008644	Aspergillus flavus	56.55	0.00e+00	1000.00
IUUC-Afu-008964	Aspergillus fumigatus	56.92	0.00e+00	1008.00
IUUC-Ani-009379	Aspergillus nidulans	57.16	0.00e+00	1018.00
IUUC-Ang-009756	Aspergillus niger	57.13	0.00e+00	1010.00
IUUC-Aor-010174	Aspergillus oryzae	56.55	0.00e+00	1000.00
IUUC-Ate-010302	Aspergillus terreus	48.24	0.00e+00	1174.00
IUUC-Ame-011229	Astyanax mexicanus	54.46	0.00e+00	1347.00
IUUC-Bgr-012300	Blumeria graminis	46.47	0.00e+00	1086.00
IUUC-Bta-012524	Bos taurus	55.61	0.00e+00	1371.00
IUUC-Bci-013781	Botrytis cinerea	47.88	0.00e+00	1143.00
IUUC-Bdi-014549	Brachypodium distachyon	65.77	0.00e+00	1729.00
IUUC-Bol-015967	Brassica oleracea	68.64	0.00e+00	1581.00
IUUC-Bra-016978	Brassica rapa	76.31	0.00e+00	1353.00
IUUC-Cel-018115	Caenorhabditis elegans	57.13	0.00e+00	979.00
IUUC-Cja-019107	Callithrix jacchus	54.61	0.00e+00	1364.00
IUUC-Cfa-020675	Canis familiaris	54.72	0.00e+00	1350.00
IUUC-Cpo-021813	Cavia porcellus	55.69	0.00e+00	1390.00
IUUC-Csa-023523	Chlorocebus sabaeus	55.77	0.00e+00	1392.00
IUUC-Cin-025572	Ciona intestinalis	52.09	0.00e+00	1278.00
IUUC-Csv-025864	Ciona savignyi	60.81	0.00e+00	1033.00
IUUC-Cgl-026510	Colletotrichum gloeosporioides	57.28	0.00e+00	1009.00
IUUC-Cne-027053	Cryptococcus neoformans	51.74	0.00e+00	1209.00
IUUC-Dre-027421	Danio rerio	54.75	0.00e+00	1358.00
IUUC-Dno-029303	Dasypus novemcinctus	55.69	0.00e+00	1396.00
IUUC-Dor-030290	Dipodomys ordii	54.31	1.00e-170	593.00
IUUC-Dse-031543	Dothistroma septosporum	46.75	0.00e+00	1078.00
IUUC-Dme-031945	Drosophila melanogaster	52.88	0.00e+00	1273.00
IUUC-Ete-032873	Echinops telfairi	62.54	0.00e+00	1090.00
IUUC-Eca-033773	Equus caballus	55.03	0.00e+00	1359.00
IUUC-Eeu-034874	Erinaceus europaeus	42.51	0.00e+00	683.00
IUUC-Fca-035739	Felis catus	54.62	0.00e+00	1353.00
IUUC-Fal-037263	Ficedula albicollis	51.67	0.00e+00	1226.00
IUUC-Fox-037738	Fusarium oxysporum	47.84	0.00e+00	1161.00
IUUC-Fso-038153	Fusarium solani	47.85	0.00e+00	1140.00
IUUC-Gmo-039602	Gadus morhua	51.74	0.00e+00	1243.00
IUUC-Ggr-039931	Gaeumannomyces graminis	55.96	0.00e+00	995.00
IUUC-Gga-040590	Gallus gallus	55.74	0.00e+00	1386.00
IUUC-Gac-041318	Gasterosteus aculeatus	54.65	0.00e+00	1360.00
IUUC-Gma-043894	Glycine max	68.33	0.00e+00	1744.00
IUUC-Ggo-045029	Gorilla gorilla	55.45	0.00e+00	1385.00
IUUC-Hsa-046078	Homo sapiens	55.29	0.00e+00	1383.00
IUUC-Hvu-047556	Hordeum vulgare	67.29	0.00e+00	1746.00
IUUC-Itr-048881	Ictidomys tridecemlineatus	47.20	0.00e+00	782.00
IUUC-Kpa-049256	Komagataella pastoris	45.78	0.00e+00	1071.00
IUUC-Lch-049706	Latimeria chalumnae	55.02	0.00e+00	1363.00
IUUC-Loc-051867	Lepisosteus oculatus	51.46	0.00e+00	850.00
IUUC-Lma-053138	Leptosphaeria maculans	48.46	0.00e+00	1142.00
IUUC-Laf-053510	Loxodonta africana	56.41	0.00e+00	1405.00
IUUC-Mcc-055836	Macaca mulatta	55.40	0.00e+00	1378.00
IUUC-Meu-056238	Macropus eugenii	58.79	0.00e+00	800.00
IUUC-Mor-057172	Magnaporthe oryzae	48.01	0.00e+00	1147.00
IUUC-Mpo-057300	Magnaporthe poae	47.44	0.00e+00	1127.00
IUUC-Mtr-058248	Medicago truncatula	68.11	0.00e+00	1748.00
IUUC-Mla-059019	Melampsora laricipopulina	50.81	0.00e+00	1249.00
IUUC-Mga-059499	Meleagris gallopavo	55.74	0.00e+00	1382.00
IUUC-Mvi-060336	Microbotryum violaceum	51.98	0.00e+00	1246.00
IUUC-Mmr-061102	Microcebus murinus	55.37	0.00e+00	1376.00
IUUC-Mdo-062594	Monodelphis domestica	55.64	0.00e+00	1401.00
IUUC-Mmu-063736	Mus musculus	55.53	0.00e+00	1385.00
IUUC-Mac-065398	Musa acuminata	63.76	0.00e+00	1618.00
IUUC-Mpu-066701	Mustela putorius furo	55.50	0.00e+00	1391.00
IUUC-Mlu-067392	Myotis lucifugus	55.69	0.00e+00	1384.00
IUUC-Nfi-068270	Neosartorya fischeri	57.25	0.00e+00	1011.00
IUUC-Ncr-068892	Neurospora crassa	48.78	0.00e+00	1145.00
IUUC-Nle-069634	Nomascus leucogenys	68.01	0.00e+00	969.00
IUUC-Ont-072488	Oreochromis niloticus	54.66	0.00e+00	1354.00
IUUC-Ocu-074211	Oryctolagus cuniculus	55.61	0.00e+00	1386.00
IUUC-Oba-075761	Oryza barthii	74.97	0.00e+00	1360.00
IUUC-Obr-076429	Oryza brachyantha	67.08	0.00e+00	1725.00
IUUC-Ogl-077364	Oryza glaberrima	74.97	0.00e+00	1360.00
IUUC-Ogu-078257	Oryza glumaepatula	74.97	0.00e+00	1360.00
IUUC-Oin-080029	Oryza indica	75.09	0.00e+00	1358.00
IUUC-Olo-080466	Oryza longistaminata	66.89	0.00e+00	1697.00
IUUC-Oni-082874	Oryza nivara	74.85	0.00e+00	1358.00
IUUC-Opu-083370	Oryza punctata	67.65	0.00e+00	1741.00
IUUC-Oru-084274	Oryza rufipogon	74.88	0.00e+00	1359.00
IUUC-Osa-085841	Oryza sativa	75.21	0.00e+00	1358.00
IUUC-Ola-086921	Oryzias latipes	53.86	0.00e+00	1333.00
IUUC-Olu-087639	Ostreococcus lucimarinus	62.23	0.00e+00	1580.00
IUUC-Oga-087991	Otolemur garnettii	52.54	0.00e+00	1286.00
IUUC-Oar-089590	Ovis aries	55.53	0.00e+00	1387.00
IUUC-Ptr-090808	Pan troglodytes	55.37	0.00e+00	1384.00
IUUC-Pan-092475	Papio anubis	55.56	0.00e+00	1385.00
IUUC-Pno-094839	Phaeosphaeria nodorum	47.45	0.00e+00	1089.00
IUUC-Ppa-095785	Physcomitrella patens	73.10	0.00e+00	1884.00
IUUC-Pab-098497	Pongo abelii	55.69	0.00e+00	1392.00
IUUC-Pca-100413	Procavia capensis	61.04	0.00e+00	700.00
IUUC-Ppe-101899	Prunus persica	69.26	0.00e+00	1743.00
IUUC-Pva-102126	Pteropus vampyrus	53.04	0.00e+00	1308.00
IUUC-Pgr-103376	Puccinia graminis	50.64	0.00e+00	1250.00
IUUC-Ptt-103978	Puccinia triticina	45.79	0.00e+00	1016.00
IUUC-Rno-105428	Rattus norvegicus	55.69	0.00e+00	1387.00
IUUC-Sce-106464	Saccharomyces cerevisiae	41.92	0.00e+00	940.00
IUUC-Sha-107301	Sarcophilus harrisii	55.18	0.00e+00	1367.00
IUUC-Sja-107961	Schizosaccharomyces japonicus	46.55	0.00e+00	1127.00
IUUC-Ssl-108643	Sclerotinia sclerotiorum	47.81	0.00e+00	1146.00
IUUC-Sit-109697	Setaria italica	67.40	0.00e+00	1740.00
IUUC-Sly-111447	Solanum lycopersicum	68.37	0.00e+00	1785.00
IUUC-Stu-112564	Solanum tuberosum	68.43	0.00e+00	1786.00
IUUC-Ssc-115933	Sus scrofa	55.61	0.00e+00	1389.00
IUUC-Tgu-117109	Taeniopygia guttata	51.14	2.00e-113	401.00
IUUC-Tru-117772	Takifugu rubripes	53.84	0.00e+00	1325.00
IUUC-Tsy-119105	Tarsius syrichta	53.57	0.00e+00	1079.00
IUUC-Tni-120556	Tetraodon nigroviridis	39.95	0.00e+00	799.00
IUUC-Tre-121951	Trichoderma reesei	47.56	0.00e+00	1128.00
IUUC-Tvi-122359	Trichoderma virens	47.73	0.00e+00	1149.00
IUUC-Tae-123688	Triticum aestivum	67.45	0.00e+00	1743.00
IUUC-Tur-126754	Triticum urartu	65.93	0.00e+00	1686.00
IUUC-Tme-127170	Tuber melanosporum	48.37	0.00e+00	1163.00
IUUC-Ttr-128217	Tursiops truncatus	53.69	0.00e+00	1315.00
IUUC-Uma-129337	Ustilago maydis	58.83	0.00e+00	1051.00
IUUC-Vda-129828	Verticillium dahliae	47.27	0.00e+00	1125.00
IUUC-Vpa-130537	Vicugna pacos	55.05	0.00e+00	1363.00
IUUC-Xtr-132857	Xenopus tropicalis	53.05	0.00e+00	1279.00
IUUC-Yli-134399	Yarrowia lipolytica	52.27	0.00e+00	883.00
IUUC-Zma-135612	Zea mays	66.39	0.00e+00	1725.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence