iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-111925

Ensembl Protein ID

PGSC0003DMT400013638

UniProt Accession

M1A345; M1A345_SOLTU

Protein Name

tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; WD repeat-containing protein 4 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400005331	PGSC0003DMT400013636	PGSC0003DMT400013636
PGSC0003DMG400005331	PGSC0003DMT400013638	PGSC0003DMT400013638

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.00e-15	56.9	200	242

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.....sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH++ v+claf     s  ++l+sG++D t+++WD+++g ll 
   Q: 200  GHSEFVSCLAFicsqdSQqWYLLSGGGDSTVRLWDFTCGSLLD 242
           89999*********87558******************998875 PP

Organism

Solanum tuberosum

Functional Description
(View)

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.

Protein Sequence
(Fasta)

MEETNMDDCE HNRESEVAPA LIAVHPTQKS VAVAVGSNLR VYNLQEGCSV SLVDDSGVHM 60
HKDSIRAIRY GAEGKLFVSA GDDKLVKIWV TDSWRCISSV SSEKRVTAVA ISNDGRFVSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCTGCTAAA TCTGTTGAAC CTTAAACCCT AGCGGAGAAG AAAGAGGAAG GTTTTACTGT 60
ACTCAACAAC AATGGAGGAA ACTAACATGG ATGATTGTGA ACACAACCGT GAATCTGAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0819--tRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR028884--Trm82
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0036265--P:RNA (guanine-N7)-methylation
GO:0030488--P:tRNA methylation

KEGG

sot:102591334

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000556	Aegilops tauschii	49.40	1.00e-95	342.00
IUUC-Atr-002431	Amborella trichopoda	58.40	1.00e-35	140.00
IUUC-Apl-003975	Anas platyrhynchos	27.30	3.00e-22	98.20
IUUC-Aca-005170	Anolis carolinensis	28.69	2.00e-17	82.00
IUUC-Aly-005769	Arabidopsis lyrata	58.80	1.00e-140	491.00
IUUC-Ath-006733	Arabidopsis thaliana	58.10	1.00e-134	471.00
IUUC-Acl-008151	Aspergillus clavatus	41.56	4.00e-11	62.00
IUUC-Afl-008518	Aspergillus flavus	27.51	1.00e-14	72.80
IUUC-Ani-009442	Aspergillus nidulans	27.78	5.00e-13	68.20
IUUC-Aor-010133	Aspergillus oryzae	27.50	2.00e-14	72.80
IUUC-Ame-010613	Astyanax mexicanus	30.59	6.00e-25	107.00
IUUC-Bgr-012067	Blumeria graminis	33.11	1.00e-15	76.60
IUUC-Bta-012788	Bos taurus	27.60	3.00e-24	104.00
IUUC-Bdi-014458	Brachypodium distachyon	54.31	5.00e-107	379.00
IUUC-Bol-015373	Brassica oleracea	57.21	3.00e-122	432.00
IUUC-Bra-016644	Brassica rapa	57.78	4.00e-129	454.00
IUUC-Cpo-021963	Cavia porcellus	32.98	2.00e-21	95.10
IUUC-Csa-024148	Chlorocebus sabaeus	32.64	1.00e-16	79.70
IUUC-Cne-026834	Cryptococcus neoformans	28.45	6.00e-17	81.30
IUUC-Dre-028427	Danio rerio	32.00	6.00e-29	120.00
IUUC-Dor-030522	Dipodomys ordii	28.24	6.00e-21	94.00
IUUC-Dme-032136	Drosophila melanogaster	38.71	2.00e-13	68.90
IUUC-Fca-035833	Felis catus	28.27	1.00e-21	95.90
IUUC-Fal-037497	Ficedula albicollis	25.86	1.00e-23	102.00
IUUC-Gga-040547	Gallus gallus	26.73	5.00e-23	100.00
IUUC-Gac-041761	Gasterosteus aculeatus	35.11	4.00e-22	97.80
IUUC-Gma-043722	Glycine max	59.43	8.00e-139	485.00
IUUC-Ggo-045340	Gorilla gorilla	31.96	3.00e-15	75.10
IUUC-Hsa-046403	Homo sapiens	32.47	6.00e-17	80.90
IUUC-Hvu-047643	Hordeum vulgare	53.96	6.00e-114	402.00
IUUC-Itr-048103	Ictidomys tridecemlineatus	29.27	5.00e-22	97.40
IUUC-Kpa-049283	Komagataella pastoris	33.82	6.00e-18	84.00
IUUC-Lch-050682	Latimeria chalumnae	32.37	2.00e-25	108.00
IUUC-Lpe-050712	Leersia perrieri	52.51	1.00e-118	418.00
IUUC-Loc-052599	Lepisosteus oculatus	35.71	1.00e-29	122.00
IUUC-Laf-054390	Loxodonta africana	34.20	7.00e-23	100.00
IUUC-Mcc-054747	Macaca mulatta	32.47	8.00e-17	80.10
IUUC-Mtr-058600	Medicago truncatula	59.81	1.00e-136	478.00
IUUC-Mla-059135	Melampsora laricipopulina	31.62	2.00e-24	105.00
IUUC-Mga-059876	Meleagris gallopavo	29.41	3.00e-20	91.30
IUUC-Mvi-060359	Microbotryum violaceum	25.45	3.00e-13	69.30
IUUC-Mmr-061518	Microcebus murinus	34.43	1.00e-21	96.30
IUUC-Mac-065417	Musa acuminata	55.11	1.00e-122	431.00
IUUC-Nle-069914	Nomascus leucogenys	30.93	9.00e-14	70.10
IUUC-Ont-071555	Oreochromis niloticus	32.33	1.00e-22	99.80
IUUC-Oan-072951	Ornithorhynchus anatinus	29.51	9.00e-24	103.00
IUUC-Ocu-074679	Oryctolagus cuniculus	29.67	2.00e-17	82.40
IUUC-Oba-075355	Oryza barthii	48.58	6.00e-105	373.00
IUUC-Obr-076769	Oryza brachyantha	52.98	1.00e-126	445.00
IUUC-Ogl-077168	Oryza glaberrima	53.22	4.00e-121	426.00
IUUC-Ogu-078275	Oryza glumaepatula	48.34	1.00e-103	369.00
IUUC-Oin-079207	Oryza indica	53.22	4.00e-121	426.00
IUUC-Ome-081169	Oryza meridionalis	39.62	8.00e-68	250.00
IUUC-Oni-082437	Oryza nivara	48.34	3.00e-104	370.00
IUUC-Opu-084031	Oryza punctata	52.98	1.00e-119	422.00
IUUC-Oru-084380	Oryza rufipogon	48.34	3.00e-104	370.00
IUUC-Osa-085327	Oryza sativa	52.98	3.00e-120	423.00
IUUC-Ola-086716	Oryzias latipes	33.48	1.00e-22	99.80
IUUC-Olu-087708	Ostreococcus lucimarinus	36.57	3.00e-39	154.00
IUUC-Oar-090239	Ovis aries	29.13	1.00e-24	105.00
IUUC-Ptr-090851	Pan troglodytes	31.96	1.00e-15	76.30
IUUC-Pan-092558	Papio anubis	32.64	1.00e-16	79.70
IUUC-Psi-093792	Pelodiscus sinensis	27.93	3.00e-23	101.00
IUUC-Ppa-095757	Physcomitrella patens	40.79	2.00e-78	285.00
IUUC-Pfo-096465	Poecilia formosa	30.60	4.00e-24	104.00
IUUC-Pab-097722	Pongo abelii	32.47	2.00e-17	82.40
IUUC-Pop-098979	Populus trichocarpa	59.77	4.00e-148	516.00
IUUC-Pca-100753	Procavia capensis	43.62	2.00e-14	72.00
IUUC-Ppe-101515	Prunus persica	65.36	7.00e-159	552.00
IUUC-Sja-107780	Schizosaccharomyces japonicus	24.66	3.00e-19	88.60
IUUC-Spo-108251	Schizosaccharomyces pombe	26.24	6.00e-15	73.90
IUUC-Smo-108938	Selaginella moellendorffii	40.28	2.00e-68	252.00
IUUC-Sit-110020	Setaria italica	50.80	3.00e-114	403.00
IUUC-Sly-111543	Solanum lycopersicum	97.00	0.00e+00	866.00
IUUC-Sbi-114061	Sorghum bicolor	50.69	2.00e-117	414.00
IUUC-Tgu-117321	Taeniopygia guttata	29.17	3.00e-17	81.30
IUUC-Tru-118454	Takifugu rubripes	33.20	5.00e-24	103.00
IUUC-Tni-119894	Tetraodon nigroviridis	31.06	2.00e-21	95.50
IUUC-Tca-121746	Theobroma cacao	60.71	2.00e-150	523.00
IUUC-Tae-124459	Triticum aestivum	53.72	2.00e-114	404.00
IUUC-Tur-126254	Triticum urartu	49.36	4.00e-90	323.00
IUUC-Tbe-127683	Tupaia belangeri	45.88	7.00e-15	73.90
IUUC-Ttr-129056	Tursiops truncatus	33.68	3.00e-23	101.00
IUUC-Vvi-131428	Vitis vinifera	65.13	8.00e-166	575.00
IUUC-Xma-133605	Xiphophorus maculatus	30.96	2.00e-23	102.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence