iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Fox-037965

Ensembl Protein ID

FOXG_02004P0

UniProt Accession

A0A0D2XDM4; A0A0D2XDM4_FUSO4

Genbank Protein ID

KNA97181.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

DS231697

Gene Name

YTM1; FOXG_02004

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
FOXG_02004	FOXG_02004T0	FOXG_02004P0

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.00e-30	102.0	370	403

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           H + v +la    +d+ lvsGs+D t++vWDlr+
   Q: 370  HVNMVVSLAPspeNDHSLVSGSHDSTCRVWDLRS 403
           66667788888777789**************986 PP

Organism

Fusarium oxysporum

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MGDVAQVKVV FTTTEQDLVL PDSKQQLLVP ADIKRYGLSR ILNSESMLDT SSPIPLDFLA 60
NGTFLRTSIE EYLATNGLSS ESTLTLQYVR SLLPPVYEAS FEHDDWVGGI DLLSATSRAG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGGGACG TCGCACAGGT GAAGGTCGTC TTCACTACCA CTGAGCAGGA TTTGGTACTT 60
CCAGACTCTA AGCAACAATT GCTCGTGCCT GCAGGTCAGT TATTGATGTT CTTGAATACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	26.88	6.00e-34	136.00
IUUC-Aml-001997	Ailuropoda melanoleuca	26.13	1.00e-31	129.00
IUUC-Atr-002544	Amborella trichopoda	24.26	2.00e-27	114.00
IUUC-Apl-003981	Anas platyrhynchos	26.38	1.00e-34	138.00
IUUC-Aca-004370	Anolis carolinensis	25.37	1.00e-36	145.00
IUUC-Aly-006455	Arabidopsis lyrata	25.98	1.00e-33	135.00
IUUC-Ath-006669	Arabidopsis thaliana	26.11	1.00e-29	122.00
IUUC-Ago-007864	Ashbya gossypii	40.12	3.00e-86	310.00
IUUC-Acl-008177	Aspergillus clavatus	51.48	4.00e-126	442.00
IUUC-Afl-008617	Aspergillus flavus	50.21	6.00e-123	432.00
IUUC-Afu-008752	Aspergillus fumigatus	50.42	6.00e-119	419.00
IUUC-Ani-009136	Aspergillus nidulans	49.79	2.00e-122	430.00
IUUC-Ang-009701	Aspergillus niger	49.25	6.00e-116	409.00
IUUC-Aor-009884	Aspergillus oryzae	50.00	3.00e-122	430.00
IUUC-Ate-010472	Aspergillus terreus	50.90	9.00e-77	278.00
IUUC-Ame-011432	Astyanax mexicanus	25.27	2.00e-39	155.00
IUUC-Bgr-012218	Blumeria graminis	56.26	3.00e-142	496.00
IUUC-Bta-012829	Bos taurus	25.16	1.00e-32	132.00
IUUC-Bci-013953	Botrytis cinerea	57.51	1.00e-152	530.00
IUUC-Bdi-014351	Brachypodium distachyon	25.05	7.00e-28	116.00
IUUC-Bol-016190	Brassica oleracea	25.84	1.00e-31	129.00
IUUC-Bra-016988	Brassica rapa	25.05	1.00e-28	118.00
IUUC-Cja-019468	Callithrix jacchus	25.37	1.00e-31	128.00
IUUC-Cfa-020471	Canis familiaris	25.37	1.00e-30	125.00
IUUC-Cpo-022260	Cavia porcellus	25.37	3.00e-31	127.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	31.14	3.00e-37	147.00
IUUC-Csa-023989	Chlorocebus sabaeus	25.37	4.00e-31	127.00
IUUC-Cin-025789	Ciona intestinalis	27.25	8.00e-32	129.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	70.10	2.00e-61	226.00
IUUC-Cne-027063	Cryptococcus neoformans	26.01	1.00e-23	102.00
IUUC-Dre-027907	Danio rerio	25.05	2.00e-38	151.00
IUUC-Dno-029225	Dasypus novemcinctus	24.95	5.00e-31	126.00
IUUC-Dor-031082	Dipodomys ordii	20.95	1.00e-16	79.00
IUUC-Dse-031308	Dothistroma septosporum	43.84	2.00e-106	377.00
IUUC-Dme-032189	Drosophila melanogaster	24.58	2.00e-28	118.00
IUUC-Ete-032247	Echinops telfairi	23.87	6.00e-25	106.00
IUUC-Eca-034285	Equus caballus	25.59	2.00e-32	131.00
IUUC-Fca-036114	Felis catus	25.80	3.00e-33	134.00
IUUC-Fal-036891	Ficedula albicollis	25.40	2.00e-29	121.00
IUUC-Fso-038244	Fusarium solani	92.00	0.00e+00	872.00
IUUC-Gmo-039040	Gadus morhua	25.38	5.00e-41	159.00
IUUC-Ggr-040093	Gaeumannomyces graminis	55.88	9.00e-132	461.00
IUUC-Gga-040610	Gallus gallus	25.90	8.00e-34	135.00
IUUC-Gac-042117	Gasterosteus aculeatus	26.01	1.00e-38	151.00
IUUC-Gma-043756	Glycine max	27.11	1.00e-35	142.00
IUUC-Ggo-045179	Gorilla gorilla	25.59	3.00e-32	130.00
IUUC-Hsa-046114	Homo sapiens	25.37	2.00e-31	128.00
IUUC-Hvu-047331	Hordeum vulgare	25.22	6.00e-26	109.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	25.16	1.00e-32	132.00
IUUC-Kpa-049304	Komagataella pastoris	40.21	1.00e-89	321.00
IUUC-Lch-050655	Latimeria chalumnae	25.63	9.00e-25	105.00
IUUC-Lpe-051675	Leersia perrieri	26.82	8.00e-34	136.00
IUUC-Loc-052868	Lepisosteus oculatus	25.68	4.00e-35	140.00
IUUC-Lma-053258	Leptosphaeria maculans	44.78	1.00e-103	369.00
IUUC-Laf-053993	Loxodonta africana	25.37	3.00e-33	134.00
IUUC-Meu-056501	Macropus eugenii	25.50	9.00e-31	125.00
IUUC-Mor-057114	Magnaporthe oryzae	59.37	3.00e-156	542.00
IUUC-Mpo-057463	Magnaporthe poae	56.12	2.00e-55	206.00
IUUC-Mtr-058367	Medicago truncatula	23.99	3.00e-26	110.00
IUUC-Mla-059107	Melampsora laricipopulina	30.92	3.00e-43	167.00
IUUC-Mga-059745	Meleagris gallopavo	26.14	2.00e-33	135.00
IUUC-Mvi-060362	Microbotryum violaceum	31.73	4.00e-18	84.00
IUUC-Mdo-062257	Monodelphis domestica	24.77	5.00e-34	136.00
IUUC-Mmu-063546	Mus musculus	25.81	4.00e-33	133.00
IUUC-Mac-065540	Musa acuminata	25.60	3.00e-30	124.00
IUUC-Mpu-066284	Mustela putorius furo	25.59	5.00e-33	133.00
IUUC-Mlu-067241	Myotis lucifugus	25.59	2.00e-33	134.00
IUUC-Nfi-068260	Neosartorya fischeri	51.48	7.00e-122	428.00
IUUC-Ncr-068719	Neurospora crassa	62.26	2.00e-151	527.00
IUUC-Nle-068981	Nomascus leucogenys	25.16	3.00e-30	124.00
IUUC-Opr-071218	Ochotona princeps	24.02	2.00e-28	118.00
IUUC-Ont-071646	Oreochromis niloticus	25.16	7.00e-37	146.00
IUUC-Oan-073453	Ornithorhynchus anatinus	24.95	5.00e-38	150.00
IUUC-Ocu-074008	Oryctolagus cuniculus	25.16	4.00e-33	134.00
IUUC-Obr-076721	Oryza brachyantha	26.58	4.00e-33	134.00
IUUC-Ogl-077229	Oryza glaberrima	27.35	2.00e-33	135.00
IUUC-Oin-079683	Oryza indica	26.78	1.00e-33	135.00
IUUC-Olo-080291	Oryza longistaminata	28.04	8.00e-20	89.00
IUUC-Ome-081834	Oryza meridionalis	27.22	5.00e-33	133.00
IUUC-Oni-082507	Oryza nivara	24.58	2.00e-28	117.00
IUUC-Opu-083396	Oryza punctata	28.25	2.00e-33	135.00
IUUC-Oru-085220	Oryza rufipogon	24.40	3.00e-28	117.00
IUUC-Osa-085767	Oryza sativa	26.78	1.00e-33	135.00
IUUC-Ola-087420	Oryzias latipes	25.59	6.00e-39	152.00
IUUC-Olu-087740	Ostreococcus lucimarinus	24.74	1.00e-23	102.00
IUUC-Oga-088264	Otolemur garnettii	25.37	2.00e-31	127.00
IUUC-Oar-089335	Ovis aries	25.37	8.00e-33	132.00
IUUC-Ptr-091320	Pan troglodytes	25.37	2.00e-31	128.00
IUUC-Pan-092833	Papio anubis	25.37	2.00e-31	128.00
IUUC-Psi-093504	Pelodiscus sinensis	26.23	3.00e-33	134.00
IUUC-Pma-094189	Petromyzon marinus	25.05	3.00e-33	134.00
IUUC-Pno-094929	Phaeosphaeria nodorum	47.44	5.00e-110	389.00
IUUC-Ppa-095429	Physcomitrella patens	28.60	8.00e-39	152.00
IUUC-Pfo-096337	Poecilia formosa	24.73	2.00e-39	155.00
IUUC-Pab-097571	Pongo abelii	25.37	2.00e-31	128.00
IUUC-Pop-099977	Populus trichocarpa	24.36	5.00e-32	130.00
IUUC-Pca-100394	Procavia capensis	24.32	3.00e-26	110.00
IUUC-Ppe-101848	Prunus persica	25.52	3.00e-34	137.00
IUUC-Pgr-103637	Puccinia graminis	29.18	6.00e-48	183.00
IUUC-Ptt-103781	Puccinia triticina	30.06	6.00e-48	183.00
IUUC-Pte-104135	Pyrenophora teres	47.03	2.00e-102	365.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	45.16	5.00e-102	362.00
IUUC-Rno-105114	Rattus norvegicus	26.01	6.00e-33	133.00
IUUC-Sce-106401	Saccharomyces cerevisiae	37.75	2.00e-82	298.00
IUUC-Sha-107122	Sarcophilus harrisii	24.41	1.00e-31	129.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	35.18	6.00e-75	272.00
IUUC-Spo-108134	Schizosaccharomyces pombe	36.27	9.00e-75	272.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	56.54	8.00e-157	545.00
IUUC-Smo-108720	Selaginella moellendorffii	27.83	2.00e-30	124.00
IUUC-Sit-110354	Setaria italica	26.60	1.00e-32	132.00
IUUC-Sly-111178	Solanum lycopersicum	26.98	1.00e-33	135.00
IUUC-Stu-112169	Solanum tuberosum	25.50	2.00e-33	135.00
IUUC-Sbi-114193	Sorghum bicolor	25.49	4.00e-30	124.00
IUUC-Sre-115002	Sporisorium reilianum	26.20	1.00e-27	115.00
IUUC-Ssc-116066	Sus scrofa	25.37	1.00e-32	132.00
IUUC-Tgu-117048	Taeniopygia guttata	26.38	1.00e-34	138.00
IUUC-Tni-119820	Tetraodon nigroviridis	25.37	1.00e-36	145.00
IUUC-Tca-121605	Theobroma cacao	27.06	5.00e-36	143.00
IUUC-Tre-121947	Trichoderma reesei	82.69	0.00e+00	783.00
IUUC-Tvi-122481	Trichoderma virens	83.08	0.00e+00	788.00
IUUC-Tae-123504	Triticum aestivum	26.88	8.00e-34	135.00
IUUC-Tur-126586	Triticum urartu	26.12	3.00e-30	124.00
IUUC-Tme-126900	Tuber melanosporum	42.42	2.00e-93	334.00
IUUC-Uma-129628	Ustilago maydis	33.33	1.00e-18	85.90
IUUC-Vpa-130260	Vicugna pacos	25.59	2.00e-32	131.00
IUUC-Vvi-131009	Vitis vinifera	26.88	2.00e-35	141.00
IUUC-Xtr-132083	Xenopus tropicalis	25.69	3.00e-35	140.00
IUUC-Xma-133094	Xiphophorus maculatus	26.01	8.00e-40	155.00
IUUC-Yli-134531	Yarrowia lipolytica	35.65	2.00e-67	247.00
IUUC-Zma-135509	Zea mays	28.31	2.00e-33	135.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence