iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pyt-104609

Ensembl Protein ID

EDU45335

UniProt Accession

B2VZH2; YTM1_PYRTR

Genbank Protein ID

EDU45335.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

DS231616

Gene Name

ytm1; PTRG_02812

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PTRG_02812	EDU45335	EDU45335

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.30e-26	88.7	275	314

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+++v+++ f  +d t   s+s+D+t+k WDl t +++ 
   Q: 275  GHSSPVSSVIFkpDDaTVAYSASHDHTLKTWDLPTSTCVD 314
           8***********6669******************999976 PP

Organism

Pyrenophora triticirepentis

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MDVDAAETKV QIRLTTRDSS LQISEEPNVL LVQTSLTRHK LSTLVNELLH RGDETRIPFD 60
ILINGEFLRT TIDEFLTKNG INAESTLDVE YTRALVPPLN VTSFEHDDWV SAVDVLSGVQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACGTCG ACGCAGCAGA GACCAAGGTG CAGATCCGCT TGACCACGCG CGATTCGAGT 60
TTGCAGATTT CGGAGGAGCC GAATGTTCTG CTTGTACAGA CGTGTAAGTA GAGAAGTGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	29.72	2.00e-45	175.00
IUUC-Aml-001997	Ailuropoda melanoleuca	26.97	6.00e-33	133.00
IUUC-Atr-002544	Amborella trichopoda	29.41	7.00e-38	149.00
IUUC-Apl-003981	Anas platyrhynchos	26.65	2.00e-35	141.00
IUUC-Aca-004370	Anolis carolinensis	25.99	3.00e-38	150.00
IUUC-Aly-006455	Arabidopsis lyrata	28.14	2.00e-43	168.00
IUUC-Ath-006669	Arabidopsis thaliana	29.48	5.00e-41	160.00
IUUC-Ago-007864	Ashbya gossypii	42.61	7.00e-94	335.00
IUUC-Acl-008177	Aspergillus clavatus	52.61	3.00e-130	456.00
IUUC-Afl-008617	Aspergillus flavus	53.77	5.00e-129	452.00
IUUC-Afu-008752	Aspergillus fumigatus	52.53	2.00e-122	430.00
IUUC-Ani-009136	Aspergillus nidulans	54.29	1.00e-123	434.00
IUUC-Ang-009701	Aspergillus niger	54.39	9.00e-124	435.00
IUUC-Aor-009884	Aspergillus oryzae	53.56	1.00e-128	451.00
IUUC-Ate-010472	Aspergillus terreus	54.41	2.00e-77	280.00
IUUC-Ame-011432	Astyanax mexicanus	26.26	3.00e-37	147.00
IUUC-Bgr-012218	Blumeria graminis	46.99	3.00e-108	383.00
IUUC-Bta-012829	Bos taurus	25.72	1.00e-33	135.00
IUUC-Bci-013953	Botrytis cinerea	46.32	5.00e-117	412.00
IUUC-Bdi-014351	Brachypodium distachyon	29.11	8.00e-41	159.00
IUUC-Bol-016514	Brassica oleracea	28.97	2.00e-41	161.00
IUUC-Bra-016988	Brassica rapa	29.20	5.00e-42	163.00
IUUC-Cel-018569	Caenorhabditis elegans	24.30	3.00e-20	90.90
IUUC-Cja-019468	Callithrix jacchus	25.50	1.00e-32	132.00
IUUC-Cfa-020471	Canis familiaris	25.28	4.00e-31	127.00
IUUC-Cpo-022260	Cavia porcellus	25.72	3.00e-32	130.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	31.03	3.00e-38	150.00
IUUC-Csa-023989	Chlorocebus sabaeus	25.28	2.00e-31	128.00
IUUC-Cho-024426	Choloepus hoffmanni	27.65	1.00e-25	109.00
IUUC-Cin-025789	Ciona intestinalis	26.99	4.00e-32	130.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	53.80	4.00e-36	142.00
IUUC-Cne-027063	Cryptococcus neoformans	26.17	3.00e-27	114.00
IUUC-Dre-027907	Danio rerio	25.27	3.00e-38	150.00
IUUC-Dno-029225	Dasypus novemcinctus	25.50	2.00e-32	131.00
IUUC-Dse-031308	Dothistroma septosporum	46.51	2.00e-106	377.00
IUUC-Dme-032189	Drosophila melanogaster	25.54	2.00e-34	137.00
IUUC-Ete-032247	Echinops telfairi	23.66	2.00e-24	105.00
IUUC-Eca-034285	Equus caballus	25.28	3.00e-32	130.00
IUUC-Eeu-035322	Erinaceus europaeus	23.72	5.00e-25	106.00
IUUC-Fca-036114	Felis catus	25.50	9.00e-33	132.00
IUUC-Fal-036891	Ficedula albicollis	27.89	4.00e-32	130.00
IUUC-Fox-037965	Fusarium oxysporum	44.95	9.00e-103	365.00
IUUC-Fso-038244	Fusarium solani	45.20	4.00e-102	363.00
IUUC-Gmo-039040	Gadus morhua	26.49	4.00e-40	157.00
IUUC-Ggr-040093	Gaeumannomyces graminis	43.39	4.00e-84	303.00
IUUC-Gga-040610	Gallus gallus	28.20	2.00e-38	151.00
IUUC-Gac-042117	Gasterosteus aculeatus	26.32	2.00e-37	147.00
IUUC-Gma-043967	Glycine max	30.37	3.00e-43	167.00
IUUC-Ggo-045179	Gorilla gorilla	25.50	6.00e-33	133.00
IUUC-Hsa-046114	Homo sapiens	25.50	3.00e-32	130.00
IUUC-Hvu-047331	Hordeum vulgare	30.02	1.00e-37	148.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	24.22	9.00e-32	129.00
IUUC-Kpa-049304	Komagataella pastoris	40.68	1.00e-91	328.00
IUUC-Lch-050655	Latimeria chalumnae	27.67	2.00e-28	117.00
IUUC-Lpe-051675	Leersia perrieri	30.37	1.00e-44	172.00
IUUC-Loc-052868	Lepisosteus oculatus	25.71	3.00e-38	150.00
IUUC-Lma-053258	Leptosphaeria maculans	84.11	0.00e+00	803.00
IUUC-Laf-053993	Loxodonta africana	25.06	3.00e-32	130.00
IUUC-Mcc-055128	Macaca mulatta	22.75	3.00e-17	81.30
IUUC-Meu-056501	Macropus eugenii	28.20	1.00e-31	128.00
IUUC-Mor-057114	Magnaporthe oryzae	46.62	2.00e-106	377.00
IUUC-Mpo-057463	Magnaporthe poae	41.67	5.00e-38	149.00
IUUC-Mtr-058367	Medicago truncatula	29.19	1.00e-37	149.00
IUUC-Mla-059107	Melampsora laricipopulina	28.43	3.00e-35	140.00
IUUC-Mga-059745	Meleagris gallopavo	28.20	1.00e-38	152.00
IUUC-Mvi-060362	Microbotryum violaceum	27.79	4.00e-36	144.00
IUUC-Mdo-062257	Monodelphis domestica	26.32	1.00e-37	149.00
IUUC-Mmu-063546	Mus musculus	26.33	2.00e-32	131.00
IUUC-Mac-065540	Musa acuminata	30.15	6.00e-39	153.00
IUUC-Mpu-066284	Mustela putorius furo	25.55	1.00e-33	135.00
IUUC-Mlu-067241	Myotis lucifugus	25.94	1.00e-32	132.00
IUUC-Nfi-068260	Neosartorya fischeri	53.16	1.00e-126	444.00
IUUC-Ncr-068719	Neurospora crassa	45.11	6.00e-96	342.00
IUUC-Nle-068981	Nomascus leucogenys	25.28	2.00e-32	131.00
IUUC-Opr-071218	Ochotona princeps	25.25	7.00e-31	126.00
IUUC-Ont-071646	Oreochromis niloticus	26.15	3.00e-36	144.00
IUUC-Oan-073453	Ornithorhynchus anatinus	25.49	8.00e-40	155.00
IUUC-Ocu-074008	Oryctolagus cuniculus	25.06	2.00e-33	135.00
IUUC-Oba-075712	Oryza barthii	26.64	2.00e-29	121.00
IUUC-Obr-076721	Oryza brachyantha	30.68	7.00e-45	172.00
IUUC-Ogl-077229	Oryza glaberrima	30.28	3.00e-45	174.00
IUUC-Ogu-078977	Oryza glumaepatula	26.86	1.00e-29	122.00
IUUC-Oin-079683	Oryza indica	30.50	3.00e-46	177.00
IUUC-Olo-080291	Oryza longistaminata	29.29	4.00e-26	109.00
IUUC-Ome-081834	Oryza meridionalis	30.72	1.00e-45	176.00
IUUC-Oni-082507	Oryza nivara	29.19	5.00e-39	153.00
IUUC-Opu-083396	Oryza punctata	30.07	2.00e-43	168.00
IUUC-Oru-085220	Oryza rufipogon	29.19	2.00e-39	154.00
IUUC-Osa-085767	Oryza sativa	30.50	3.00e-46	177.00
IUUC-Ola-087420	Oryzias latipes	25.50	6.00e-40	156.00
IUUC-Olu-087740	Ostreococcus lucimarinus	27.94	5.00e-32	130.00
IUUC-Oga-088264	Otolemur garnettii	25.50	3.00e-33	134.00
IUUC-Oar-089335	Ovis aries	25.28	1.00e-32	132.00
IUUC-Ptr-091320	Pan troglodytes	25.50	3.00e-32	130.00
IUUC-Pan-092833	Papio anubis	25.50	7.00e-32	129.00
IUUC-Psi-093504	Pelodiscus sinensis	26.59	2.00e-34	138.00
IUUC-Pma-094189	Petromyzon marinus	28.54	5.00e-38	150.00
IUUC-Pno-094929	Phaeosphaeria nodorum	79.66	0.00e+00	736.00
IUUC-Ppa-095429	Physcomitrella patens	31.66	2.00e-45	174.00
IUUC-Pfo-096337	Poecilia formosa	25.50	1.00e-38	152.00
IUUC-Pab-097571	Pongo abelii	25.72	2.00e-32	131.00
IUUC-Pop-099977	Populus trichocarpa	31.57	7.00e-48	182.00
IUUC-Pca-100394	Procavia capensis	24.82	3.00e-27	114.00
IUUC-Ppe-101848	Prunus persica	32.52	1.00e-43	169.00
IUUC-Pva-102921	Pteropus vampyrus	23.45	3.00e-12	64.30
IUUC-Pgr-103637	Puccinia graminis	26.84	9.00e-38	149.00
IUUC-Ptt-103781	Puccinia triticina	26.33	3.00e-37	147.00
IUUC-Pte-104135	Pyrenophora teres	98.13	0.00e+00	864.00
IUUC-Rno-105114	Rattus norvegicus	25.28	7.00e-32	129.00
IUUC-Sce-106401	Saccharomyces cerevisiae	40.54	3.00e-91	327.00
IUUC-Sha-107122	Sarcophilus harrisii	26.05	7.00e-32	129.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	37.28	5.00e-79	286.00
IUUC-Spo-108134	Schizosaccharomyces pombe	36.25	2.00e-72	264.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	48.42	8.00e-124	435.00
IUUC-Smo-108761	Selaginella moellendorffii	28.81	2.00e-36	145.00
IUUC-Sit-110354	Setaria italica	28.94	2.00e-42	165.00
IUUC-Sly-111023	Solanum lycopersicum	27.25	8.00e-42	162.00
IUUC-Stu-112169	Solanum tuberosum	28.51	6.00e-45	173.00
IUUC-Sbi-114193	Sorghum bicolor	30.07	7.00e-42	162.00
IUUC-Sre-115002	Sporisorium reilianum	37.88	5.00e-27	114.00
IUUC-Ssc-116066	Sus scrofa	25.50	2.00e-33	135.00
IUUC-Tgu-117048	Taeniopygia guttata	27.87	8.00e-38	149.00
IUUC-Tni-119820	Tetraodon nigroviridis	26.81	2.00e-36	144.00
IUUC-Tca-121605	Theobroma cacao	29.01	4.00e-42	164.00
IUUC-Tre-121947	Trichoderma reesei	43.34	2.00e-97	347.00
IUUC-Tvi-122481	Trichoderma virens	43.55	4.00e-98	350.00
IUUC-Tae-123847	Triticum aestivum	29.72	2.00e-45	175.00
IUUC-Tur-126586	Triticum urartu	29.26	2.00e-40	158.00
IUUC-Tme-126900	Tuber melanosporum	43.49	6.00e-98	349.00
IUUC-Uma-129628	Ustilago maydis	27.24	3.00e-23	101.00
IUUC-Vpa-130260	Vicugna pacos	25.28	1.00e-32	132.00
IUUC-Vvi-131009	Vitis vinifera	31.84	7.00e-47	179.00
IUUC-Xtr-132083	Xenopus tropicalis	27.02	3.00e-39	154.00
IUUC-Xma-133094	Xiphophorus maculatus	25.93	2.00e-38	151.00
IUUC-Yli-134531	Yarrowia lipolytica	34.92	7.00e-54	202.00
IUUC-Zma-135509	Zea mays	29.09	2.00e-42	164.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence