iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005978

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348719

Gene Name

MSI3; ARALYDRAFT_912880

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_700622.1	scaffold_700622.1	scaffold_700622.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-32	110.0	216	251

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           gH++ + ++a+   +++++ s +dD+++ +WDlrt+
   Q: 216  GHQSIIEDVAWhmkNENIFGSVGDDCQLVIWDLRTN 251
           8************766*****************996 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MAAEEGKDEP GLDQVEEEFS VWKRNTPFLY DLMISHPLEW PSLTLHWVPS TPIPYAKDPY 60
FAVHKLILGT HTSGGAQDFL MVADVVIPTP DAEPGLGGRD QEPIVPKVEI KQKIRVDGEV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACGAGTAAG GTAGAGAGTG ATGGCGGCGG AAGAGGGTAA AGATGAGCCG GGATTGGATC 60
AGGTGGAGGA AGAGTTCTCT GTTTGGAAAA GGAACACTCC ATTTTTATAC GATCTTATGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus

KEGG

aly:ARALYDRAFT_912880

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007097	Arabidopsis thaliana	98.50	0.00e+00	823.00
IUUC-Gma-043256	Glycine max	63.57	7.00e-147	512.00
IUUC-Kpa-049258	Komagataella pastoris	34.32	3.00e-70	258.00
IUUC-Mtr-058292	Medicago truncatula	61.50	4.00e-141	493.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence