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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-006688
Ensembl Protein ID AT5G38470.1
UniProt Accession Q84L30; Q94C35; Q9FF16; RD23D_ARATH
Genbank Protein ID BAC76394.1; BAC76395.1; BAB09359.1; AED94321.1; AAK59766.1; AAL25609.1; AAL87405.1; AAM65106.1
Protein Name Ubiquitin receptor RAD23d; Putative DNA repair protein RAD23-4; RAD23-like protein 4
Genbank Nucleotide ID AB109198; AB109199; AB005248; CP002688; AY037181; AY058196; AY081835; AY087564
Gene Name RAD23D; RAD23; RAD23-4; At5g38470; MXI10.20
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G38470 AT5G38470.1 AT5G38470.1
AT5G38470 AT5G38470.2 AT5G38470.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexHINTMentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
UBD/Alpha-Helix/UBA UBA 20059542; 20086187; 21764993
Classification
Family E-value Score Start End
UBD/Alpha-Helix/UBA 3.00e-23 82.1 148 189
ULD/UDP/UBQ/UBQ_PIM 2.70e-23 82.6 1 77
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/UBA
   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e+ ++q+ +MG   +dr+++++aLraa+nn+e+AveyL++g
   Q: 148  LESTVQQILDMGggsWDRDTVVRALRAAFNNPERAVEYLYSG 189
           699************************************986 PP
   

   ULD/UDP/UBQ/UBQ_PIM
   S: 1    mkltvktlkgkefelevseddtveelKekiakesg..vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mk++vktl+g++fe+ev++ d+v+++K +i++++g  +p+++q LI++Gk+LkD+ttL+e+++ ++s+++++++k+k
   Q: 1    MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGaeYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK 77
           99***********************************************************************9987 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP) (By similarity).
 May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP) (By similarity).
Protein Sequence
(Fasta)
MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE 60
NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA TPQVSAPTAS VPVPTSGTAT 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006688|UBD,UBA;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTCAATACCC CAAAAGCGGT CTCTCTCTAT ACTTTGCTTC TCTCTCTAAA CTTCTCTCTT 60
TCTTTTTTTC TCAAAGCTTT TTTCCTTCTC CCTAAACGAT GAAGATTTTC GTGAAGACTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006688|UBD,UBA;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0227--DNA damage
KW-0234--DNA repair
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd
PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2
Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding
PRINTS

PR01839--RAD23PROTEIN
SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0031593--F:polyubiquitin binding
GO:0070628--F:proteasome binding
GO:0043130--F:ubiquitin binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0009409--P:response to cold
KEGG ath:AT5G38470
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000770 Aegilops tauschii 64.63 1.00e-82 299.00
IUUC-Aly-005486 Arabidopsis lyrata 93.65 3.00e-162 563.00
IUUC-Ago-007830 Ashbya gossypii 31.31 6.00e-16 77.80
IUUC-Acl-008212 Aspergillus clavatus 34.35 4.00e-33 134.00
IUUC-Ani-009460 Aspergillus nidulans 36.08 1.00e-37 150.00
IUUC-Ate-010458 Aspergillus terreus 37.10 1.00e-41 163.00
IUUC-Bol-015354 Brassica oleracea 82.81 2.00e-139 487.00
IUUC-Bra-017582 Brassica rapa 81.89 3.00e-136 477.00
IUUC-Cel-018364 Caenorhabditis elegans 29.02 5.00e-20 90.90
IUUC-Cgl-026495 Colletotrichum gloeosporioides 46.94 1.00e-17 83.60
IUUC-Dse-031336 Dothistroma septosporum 40.00 3.00e-27 115.00
IUUC-Ggr-040116 Gaeumannomyces graminis 50.00 1.00e-21 96.70
IUUC-Gga-040544 Gallus gallus 33.33 5.00e-37 147.00
IUUC-Hvu-047832 Hordeum vulgare 65.60 9.00e-84 303.00
IUUC-Kpa-049314 Komagataella pastoris 30.11 6.00e-33 134.00
IUUC-Lpe-051087 Leersia perrieri 66.80 8.00e-89 319.00
IUUC-Mor-057287 Magnaporthe oryzae 50.85 2.00e-19 89.70
IUUC-Mpo-057609 Magnaporthe poae 49.21 3.00e-21 95.10
IUUC-Mtr-058148 Medicago truncatula 65.74 1.00e-131 462.00
IUUC-Mac-065180 Musa acuminata 64.63 3.00e-122 431.00
IUUC-Ncr-068685 Neurospora crassa 33.50 4.00e-36 144.00
IUUC-Oba-075951 Oryza barthii 58.37 1.00e-104 372.00
IUUC-Ogl-077152 Oryza glaberrima 58.37 1.00e-104 372.00
IUUC-Ogu-078896 Oryza glumaepatula 59.18 8.00e-105 373.00
IUUC-Oin-079817 Oryza indica 63.35 6.00e-85 306.00
IUUC-Olo-080929 Oryza longistaminata 63.75 1.00e-84 306.00
IUUC-Ome-081866 Oryza meridionalis 64.14 2.00e-85 308.00
IUUC-Oni-083092 Oryza nivara 63.35 6.00e-85 306.00
IUUC-Opu-083756 Oryza punctata 65.61 5.00e-88 317.00
IUUC-Oru-084816 Oryza rufipogon 63.35 6.00e-85 306.00
IUUC-Osa-086112 Oryza sativa 63.35 6.00e-85 306.00
IUUC-Ppa-095654 Physcomitrella patens 60.16 1.00e-103 369.00
IUUC-Pop-099642 Populus trichocarpa 65.42 1.00e-132 465.00
IUUC-Ppe-101830 Prunus persica 68.64 7.00e-123 432.00
IUUC-Pte-104303 Pyrenophora teres 47.69 2.00e-22 99.80
IUUC-Pyt-104580 Pyrenophora triticirepentis 47.69 2.00e-22 99.40
IUUC-Sja-107851 Schizosaccharomyces japonicus 34.73 5.00e-43 167.00
IUUC-Ssl-108382 Sclerotinia sclerotiorum 44.00 1.00e-18 87.00
IUUC-Sit-110235 Setaria italica 66.80 8.00e-81 293.00
IUUC-Sly-111480 Solanum lycopersicum 69.72 2.00e-141 494.00
IUUC-Sbi-114835 Sorghum bicolor 66.80 2.00e-75 275.00
IUUC-Tca-121661 Theobroma cacao 68.83 5.00e-126 443.00
IUUC-Tae-125842 Triticum aestivum 66.92 9.00e-80 289.00
IUUC-Tur-126610 Triticum urartu 64.63 3.00e-83 301.00
IUUC-Tbe-127493 Tupaia belangeri 39.05 2.00e-18 86.30
IUUC-Uma-129484 Ustilago maydis 50.85 1.00e-11 63.90
IUUC-Vda-129946 Verticillium dahliae 49.23 3.00e-23 101.00
IUUC-Yli-134615 Yarrowia lipolytica 31.70 1.00e-37 149.00
IUUC-Zma-135463 Zea mays 61.25 3.00e-96 344.00
Created Date 25-Jun-2017

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