iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLACG00000013611.2	ENSLACT00000026087.1	ENSLACP00000022351.1
ENSLACG00000013611.2	ENSLACT00000015566.1	ENSLACP00000015460.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.00e-06	27.6	17	43

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sd.tllvsGsdDgtikvWDl 30
            +c+++  + +++++G+ Dg +kv  l
   Q: 17   LRCVSWnKEqGFIACGGEDGLLKVLKL 43
           58****85579************9775 PP

Organism

Latimeria chalumnae

Protein Sequence
(Fasta)

MFIYLSKKIA IPNGLKLRCV SWNKEQGFIA CGGEDGLLKV LKLEVQADDA KLKGLAAPSN 60
LSMNQTLEGH SDAVQVVTWN EQYQKLTTSD QNGLIIVWML YKGSWYEEMI NNRNKSVVRS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGGGACTCC TCTCGGCAAA CCGAGAAAAC AAAACCTTCC GAGTGCGGCT GGATTACTTC 60
AGATACGGTT TCAGACTGTC ATAGTCACAT CATTACTTTT ATTTATTTTT TTAAAAAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0966--Cell projection
KW-0969--Cilium
KW-0970--Cilium biogenesis/degradation
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR000547--Clathrin_H-chain/VPS_repeat
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR017233--WDR35

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00637--Clathrin

SMART

SM00320--WD40

Gene Ontology

GO:0036064--C:ciliary basal body
GO:0005737--C:cytoplasm
GO:0030991--C:intraciliary transport particle A
GO:0060271--P:cilium assembly
GO:0035721--P:intraciliary retrograde transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-004049	Anas platyrhynchos	82.32	0.00e+00	2080.00
IUUC-Cin-025165	Ciona intestinalis	69.67	4.00e-136	477.00
IUUC-Dno-029699	Dasypus novemcinctus	89.45	0.00e+00	766.00
IUUC-Dme-032005	Drosophila melanogaster	48.65	0.00e+00	1099.00
IUUC-Gmo-038607	Gadus morhua	79.32	0.00e+00	1973.00
IUUC-Gac-041560	Gasterosteus aculeatus	80.76	0.00e+00	2005.00
IUUC-Kpa-049219	Komagataella pastoris	31.94	2.00e-04	40.80
IUUC-Psi-093525	Pelodiscus sinensis	86.11	0.00e+00	2143.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence