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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-104959
UUCD1 version UUC-RaN-00431
Ensembl Protein ID ENSRNOP00000071936.1
UniProt Accession A0A0G2K1Q2; A0A0G2K1Q2_RAT
Genbank Protein ID ENSRNOP00000071936
Protein Name SNF2 histone linker PHD RING helicase
Genbank Nucleotide ID AABR07000222
Gene Name Shprh
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000014450.7 ENSRNOT00000019893.6 ENSRNOP00000019893.5
ENSRNOG00000014450.7 ENSRNOT00000088292.1 ENSRNOP00000071936.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 84.35 0.00e+00 2828.00 IUUC-Hsa-046172
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MSSRRKRAPP MKVDEERQQQ LRWNMHEDLR NEPLSLTEEE RACWDADSSD CIIIDDDPPE 60
GAAHRDKKRC TESVSILNST EKETPLSVAL NVTISPHPSD DSWKAFLGDF VLQLLPEESL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-104959|E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGCTGGTGCT GTGGCTTCCG GCCCCGGGCG CGCAACTCCA CCCAGAGTGC AGCGCGCGTG 60
CGCAACTCCG GCAGGTGTGT GAAGCGACTG TCCGCCCGGG ATCTGCAGGC TCCGAGGAGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-104959|E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR005818--Histone_H1/H5_H15
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR011990--TPR-like_helical_dom
IPR011991--WHTH_DNA-bd_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS51504--H15
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50089--ZF_RING_2
Pfam

PF00271--Helicase_C
PF00538--Linker_histone
PF00176--SNF2_N
SMART

SM00487--DEXDc
SM00526--H15
SM00490--HELICc
SM00249--PHD
Gene Ontology

GO:0000786--C:nucleosome
GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006334--P:nucleosome assembly
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Atr-002896 Amborella trichopoda 40.08 3.00e-88 320.00
IUUC-Apl-003428 Anas platyrhynchos 69.51 0.00e+00 2335.00
IUUC-Aca-004510 Anolis carolinensis 61.14 0.00e+00 1932.00
IUUC-Aly-005691 Arabidopsis lyrata 33.25 3.00e-152 533.00
IUUC-Ath-007139 Arabidopsis thaliana 32.43 1.00e-148 521.00
IUUC-Ago-007786 Ashbya gossypii 27.00 6.00e-27 117.00
IUUC-Acl-008380 Aspergillus clavatus 28.96 5.00e-30 127.00
IUUC-Afu-008890 Aspergillus fumigatus 35.27 5.00e-36 147.00
IUUC-Ani-009351 Aspergillus nidulans 32.27 5.00e-31 130.00
IUUC-Ang-009583 Aspergillus niger 36.10 2.00e-35 145.00
IUUC-Aor-009893 Aspergillus oryzae 34.06 2.00e-33 138.00
IUUC-Ate-010385 Aspergillus terreus 34.22 1.00e-40 162.00
IUUC-Ame-011882 Astyanax mexicanus 60.75 0.00e+00 2012.00
IUUC-Bgr-012295 Blumeria graminis 34.76 9.00e-42 166.00
IUUC-Bta-012528 Bos taurus 82.96 0.00e+00 2837.00
IUUC-Bci-013701 Botrytis cinerea 35.32 3.00e-37 151.00
IUUC-Bdi-014034 Brachypodium distachyon 38.05 1.00e-76 282.00
IUUC-Bol-015555 Brassica oleracea 33.67 9.00e-145 508.00
IUUC-Bra-016916 Brassica rapa 33.93 2.00e-157 550.00
IUUC-Cja-019391 Callithrix jacchus 83.26 0.00e+00 2807.00
IUUC-Cfa-020732 Canis familiaris 84.88 0.00e+00 2911.00
IUUC-Cpo-021641 Cavia porcellus 82.15 0.00e+00 2788.00
IUUC-Cre-022879 Chlamydomonas reinhardtii 30.67 3.00e-23 104.00
IUUC-Csa-023937 Chlorocebus sabaeus 84.30 0.00e+00 2860.00
IUUC-Cho-024617 Choloepus hoffmanni 71.72 8.00e-108 385.00
IUUC-Cgl-026624 Colletotrichum gloeosporioides 37.02 2.00e-39 158.00
IUUC-Cme-027178 Cyanidioschyzon merolae 33.73 5.00e-131 462.00
IUUC-Dre-028441 Danio rerio 61.72 0.00e+00 2046.00
IUUC-Dno-029395 Dasypus novemcinctus 77.37 0.00e+00 2639.00
IUUC-Dse-031372 Dothistroma septosporum 33.53 2.00e-40 161.00
IUUC-Dme-031785 Drosophila melanogaster 30.80 7.00e-113 402.00
IUUC-Ete-032502 Echinops telfairi 77.64 0.00e+00 1465.00
IUUC-Eca-033455 Equus caballus 80.08 0.00e+00 2703.00
IUUC-Eeu-034956 Erinaceus europaeus 82.73 0.00e+00 1914.00
IUUC-Fca-035984 Felis catus 82.93 0.00e+00 2319.00
IUUC-Fal-036811 Ficedula albicollis 85.28 0.00e+00 1818.00
IUUC-Fox-038048 Fusarium oxysporum 44.44 5.00e-33 137.00
IUUC-Fso-038224 Fusarium solani 33.90 7.00e-37 149.00
IUUC-Gmo-039126 Gadus morhua 74.36 0.00e+00 1623.00
IUUC-Ggr-040102 Gaeumannomyces graminis 30.66 1.00e-27 119.00
IUUC-Gga-041238 Gallus gallus 69.70 0.00e+00 2338.00
IUUC-Gac-041614 Gasterosteus aculeatus 76.13 0.00e+00 1667.00
IUUC-Gma-043259 Glycine max 40.17 1.00e-78 289.00
IUUC-Ggo-045213 Gorilla gorilla 81.66 0.00e+00 2738.00
IUUC-Hsa-046172 Homo sapiens 84.52 0.00e+00 2852.00
IUUC-Hvu-047286 Hordeum vulgare 39.50 3.00e-34 139.00
IUUC-Itr-048880 Ictidomys tridecemlineatus 84.57 0.00e+00 2872.00
IUUC-Kpa-049196 Komagataella pastoris 26.63 5.00e-24 107.00
IUUC-Lch-050648 Latimeria chalumnae 63.38 0.00e+00 1918.00
IUUC-Lpe-050871 Leersia perrieri 38.48 8.00e-78 286.00
IUUC-Loc-051862 Lepisosteus oculatus 62.27 0.00e+00 2053.00
IUUC-Lma-053266 Leptosphaeria maculans 28.94 6.00e-26 113.00
IUUC-Laf-053851 Loxodonta africana 83.02 0.00e+00 2792.00
IUUC-Mcc-055066 Macaca mulatta 84.24 0.00e+00 2858.00
IUUC-Meu-056104 Macropus eugenii 79.50 0.00e+00 718.00
IUUC-Mor-057226 Magnaporthe oryzae 26.94 2.00e-30 129.00
IUUC-Mpo-057528 Magnaporthe poae 28.13 2.00e-28 122.00
IUUC-Mtr-058336 Medicago truncatula 39.27 4.00e-80 293.00
IUUC-Mga-059775 Meleagris gallopavo 85.83 0.00e+00 1850.00
IUUC-Mvi-060213 Microbotryum violaceum 32.28 3.00e-28 122.00
IUUC-Mdo-062943 Monodelphis domestica 73.47 0.00e+00 2440.00
IUUC-Mmu-064115 Mus musculus 91.74 0.00e+00 3117.00
IUUC-Mac-064445 Musa acuminata 40.97 7.00e-90 325.00
IUUC-Mpu-066850 Mustela putorius furo 85.06 0.00e+00 2915.00
IUUC-Mlu-067610 Myotis lucifugus 83.49 0.00e+00 2862.00
IUUC-Nfi-068264 Neosartorya fischeri 35.27 4.00e-36 147.00
IUUC-Ncr-068745 Neurospora crassa 29.78 6.00e-35 143.00
IUUC-Nle-070055 Nomascus leucogenys 84.29 0.00e+00 2850.00
IUUC-Ont-071526 Oreochromis niloticus 62.46 0.00e+00 2055.00
IUUC-Oan-073609 Ornithorhynchus anatinus 83.12 0.00e+00 1361.00
IUUC-Ocu-074042 Oryctolagus cuniculus 82.86 0.00e+00 2832.00
IUUC-Oba-075121 Oryza barthii 39.05 3.00e-76 281.00
IUUC-Obr-076312 Oryza brachyantha 30.04 3.00e-126 447.00
IUUC-Ogl-077560 Oryza glaberrima 39.05 4.00e-76 280.00
IUUC-Ogu-078746 Oryza glumaepatula 39.05 4.00e-77 283.00
IUUC-Oin-080153 Oryza indica 31.00 2.00e-115 411.00
IUUC-Olo-080436 Oryza longistaminata 31.08 6.00e-133 469.00
IUUC-Oni-082845 Oryza nivara 39.05 6.00e-76 280.00
IUUC-Opu-083321 Oryza punctata 31.01 3.00e-134 473.00
IUUC-Oru-084329 Oryza rufipogon 39.05 1.00e-76 281.00
IUUC-Osa-085508 Oryza sativa 38.83 4.00e-31 127.00
IUUC-Olu-087671 Ostreococcus lucimarinus 32.72 2.00e-147 517.00
IUUC-Oar-090005 Ovis aries 83.28 0.00e+00 2846.00
IUUC-Pan-092723 Papio anubis 82.95 0.00e+00 2772.00
IUUC-Psi-093870 Pelodiscus sinensis 70.97 0.00e+00 2382.00
IUUC-Pma-094750 Petromyzon marinus 72.22 2.00e-101 361.00
IUUC-Pno-095005 Phaeosphaeria nodorum 29.45 4.00e-32 134.00
IUUC-Ppa-095619 Physcomitrella patens 31.79 2.00e-82 301.00
IUUC-Pfo-096833 Poecilia formosa 61.99 0.00e+00 2051.00
IUUC-Pab-098544 Pongo abelii 84.64 0.00e+00 2861.00
IUUC-Pop-099540 Populus trichocarpa 41.23 1.00e-91 331.00
IUUC-Ppe-102038 Prunus persica 40.21 2.00e-92 335.00
IUUC-Pte-104081 Pyrenophora teres 32.58 2.00e-31 132.00
IUUC-Pyt-104477 Pyrenophora triticirepentis 30.79 8.00e-34 139.00
IUUC-Sha-107078 Sarcophilus harrisii 72.19 0.00e+00 2410.00
IUUC-Sja-107755 Schizosaccharomyces japonicus 30.95 7.00e-37 150.00
IUUC-Spo-108132 Schizosaccharomyces pombe 34.12 3.00e-41 164.00
IUUC-Ssl-108615 Sclerotinia sclerotiorum 28.62 1.00e-32 135.00
IUUC-Smo-108991 Selaginella moellendorffii 36.46 1.00e-174 608.00
IUUC-Sit-110047 Setaria italica 31.74 2.00e-48 188.00
IUUC-Sly-111232 Solanum lycopersicum 39.17 1.00e-81 298.00
IUUC-Sar-113738 Sorex araneus 75.69 0.00e+00 2581.00
IUUC-Sbi-114485 Sorghum bicolor 33.75 1.00e-59 225.00
IUUC-Ssc-116362 Sus scrofa 84.20 0.00e+00 2862.00
IUUC-Tgu-117188 Taeniopygia guttata 69.54 0.00e+00 2307.00
IUUC-Tru-117637 Takifugu rubripes 78.08 0.00e+00 1656.00
IUUC-Tni-119701 Tetraodon nigroviridis 61.29 0.00e+00 2032.00
IUUC-Tca-121831 Theobroma cacao 41.72 7.00e-94 339.00
IUUC-Tre-122005 Trichoderma reesei 29.75 8.00e-28 120.00
IUUC-Tvi-122328 Trichoderma virens 30.60 3.00e-29 124.00
IUUC-Tae-123569 Triticum aestivum 30.67 3.00e-131 463.00
IUUC-Tur-125964 Triticum urartu 37.37 7.00e-73 269.00
IUUC-Tbe-127799 Tupaia belangeri 69.41 0.00e+00 1498.00
IUUC-Vda-129795 Verticillium dahliae 31.48 6.00e-29 123.00
IUUC-Vvi-131682 Vitis vinifera 41.70 6.00e-96 346.00
IUUC-Xtr-132232 Xenopus tropicalis 62.68 0.00e+00 2040.00
IUUC-Xma-133291 Xiphophorus maculatus 60.76 0.00e+00 1971.00
IUUC-Yli-134508 Yarrowia lipolytica 28.05 2.00e-27 119.00
IUUC-Zma-135327 Zea mays 38.38 3.00e-75 277.00
Created Date 25-Jun-2017

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