iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121232

Ensembl Protein ID

EOY27406

UniProt Accession

A0A061GCU2; A0A061GCU2_THECC

Genbank Protein ID

EOY27406.1

Protein Name

RING-H2 finger protein ATL3, putative

Genbank Nucleotide ID

CM001884

Gene Name

TCM_029257

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_029257	EOY27406	EOY27406

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.20e-08	34.5	104	146

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl+++   ++  ++lp C+H fh dC+ +w       + + +CPlCr
   Q: 104  CAVCLSELvegEK-ARLLPkCNHGFHVDCIDMW------FQSHSTCPLCR 146
           ********77544.899999*************......9999******8 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MDKPGFDEST AVAITGKIMV IAIIVLFLVV VFVLFLHLYA KWFWWRIEEP TPPPSRRNRR 60
RFVFAPGQDT AHPLRATKGL DPTILASLPV LMFRQEEFKD GLECAVCLSE LVEGEKARLL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAGTCAGAA AGTTGGACCC AAGTAGCGTC ATCTTCTTCA CTTGTTGCAG CTCAACCCCC 60
CTCCCCAACC TCTCTCAATA GCAAAGTCCA AAAAAATCTC TCTTTCTTTA ATTCTTTCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG

tcc:TCM_029257

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003085	Amborella trichopoda	39.76	6.00e-35	140.00
IUUC-Aly-005421	Arabidopsis lyrata	47.46	3.00e-54	204.00
IUUC-Ath-006957	Arabidopsis thaliana	46.18	3.00e-51	194.00
IUUC-Bdi-014880	Brachypodium distachyon	47.37	1.00e-26	112.00
IUUC-Bol-015888	Brassica oleracea	49.77	8.00e-43	166.00
IUUC-Bra-016720	Brassica rapa	49.77	2.00e-42	165.00
IUUC-Gma-043714	Glycine max	52.15	2.00e-57	214.00
IUUC-Hvu-047652	Hordeum vulgare	41.88	5.00e-28	117.00
IUUC-Lpe-051092	Leersia perrieri	42.86	3.00e-20	91.70
IUUC-Mtr-058409	Medicago truncatula	60.66	5.00e-55	207.00
IUUC-Mac-065123	Musa acuminata	43.72	2.00e-37	148.00
IUUC-Ont-072086	Oreochromis niloticus	37.63	9.00e-15	74.70
IUUC-Oba-074984	Oryza barthii	51.46	3.00e-25	108.00
IUUC-Obr-076471	Oryza brachyantha	44.34	8.00e-21	92.80
IUUC-Ogl-077250	Oryza glaberrima	51.46	3.00e-25	108.00
IUUC-Ogu-078929	Oryza glumaepatula	51.46	3.00e-25	108.00
IUUC-Oin-079559	Oryza indica	51.46	3.00e-25	108.00
IUUC-Ome-081596	Oryza meridionalis	48.57	2.00e-22	99.00
IUUC-Oni-082758	Oryza nivara	49.11	2.00e-25	108.00
IUUC-Opu-083878	Oryza punctata	53.21	5.00e-26	110.00
IUUC-Oru-084427	Oryza rufipogon	51.46	3.00e-25	108.00
IUUC-Osa-086236	Oryza sativa	51.46	3.00e-25	108.00
IUUC-Pop-099883	Populus trichocarpa	54.86	2.00e-53	201.00
IUUC-Pca-100143	Procavia capensis	37.37	2.00e-14	73.90
IUUC-Ppe-101738	Prunus persica	66.30	4.00e-51	193.00
IUUC-Sit-109688	Setaria italica	34.96	7.00e-16	77.00
IUUC-Sly-110862	Solanum lycopersicum	48.78	2.00e-47	181.00
IUUC-Stu-112429	Solanum tuberosum	46.89	4.00e-49	187.00
IUUC-Sbi-114427	Sorghum bicolor	41.84	6.00e-31	127.00
IUUC-Tae-125140	Triticum aestivum	43.75	4.00e-29	121.00
IUUC-Tur-126264	Triticum urartu	39.84	4.00e-26	110.00
IUUC-Vvi-131354	Vitis vinifera	57.04	1.00e-60	225.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence