iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098956

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_754893; POPTR_0002s11730g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s11730	POPTR_0002s11730.1	POPTR_0002s11730.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.60e-28	99.6	62	133

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
           evp+ f+CpIsl++M+dPv+l++G+ty+rs+I kw++ g+ tcP+t+q+l +++++Pn tl++li +w +++
   Q: 62   EVPSVFICPISLDPMQDPVTLCTGQTYERSNILKWFSLGHCTCPTTMQELWDDTVTPNRTLQQLIYSWFSQK 133
           69******************************************************************9987 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MPMYQPNSHR NLRLDVGAGG QILDLETAIK DGILGGGGGL VCAGVTEKLD LKKMIEELES 60
IEVPSVFICP ISLDPMQDPV TLCTGQTYER SNILKWFSLG HCTCPTTMQE LWDDTVTPNR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCCATTCCA TTCAACACAC ACTTTTTTTT CCTTTCTTTT TTCTGGGGCC TCCATTAGAA 60
GAGACTACAT ACTTGCTAGA TAACTCTTTC ATTTTCTCGA CCTCAAATGC TCTTACTCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0002s11730g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000254	Aegilops tauschii	55.56	2.00e-134	471.00
IUUC-Aly-005542	Arabidopsis lyrata	67.63	1.00e-148	519.00
IUUC-Ath-007399	Arabidopsis thaliana	67.19	1.00e-150	525.00
IUUC-Bdi-014966	Brachypodium distachyon	55.77	2.00e-138	485.00
IUUC-Bol-015410	Brassica oleracea	66.74	9.00e-146	509.00
IUUC-Bra-017594	Brassica rapa	69.29	1.00e-142	499.00
IUUC-Gma-043270	Glycine max	69.93	5.00e-170	590.00
IUUC-Hvu-047172	Hordeum vulgare	56.29	5.00e-133	467.00
IUUC-Lpe-050937	Leersia perrieri	55.32	1.00e-119	422.00
IUUC-Mtr-058060	Medicago truncatula	70.35	1.00e-169	588.00
IUUC-Mac-065362	Musa acuminata	67.32	5.00e-155	540.00
IUUC-Oba-075363	Oryza barthii	52.35	2.00e-95	342.00
IUUC-Obr-076221	Oryza brachyantha	56.62	2.00e-129	455.00
IUUC-Ogl-077601	Oryza glaberrima	57.26	4.00e-116	410.00
IUUC-Ogu-078802	Oryza glumaepatula	57.05	7.00e-125	440.00
IUUC-Oin-079670	Oryza indica	57.05	8.00e-116	409.00
IUUC-Ome-081565	Oryza meridionalis	57.05	8.00e-116	409.00
IUUC-Oni-082638	Oryza nivara	57.05	8.00e-116	409.00
IUUC-Oru-084585	Oryza rufipogon	57.05	8.00e-116	409.00
IUUC-Osa-086056	Oryza sativa	57.05	8.00e-116	409.00
IUUC-Ppe-101369	Prunus persica	79.61	0.00e+00	662.00
IUUC-Sit-109761	Setaria italica	57.91	2.00e-130	458.00
IUUC-Sly-111041	Solanum lycopersicum	66.37	1.00e-151	529.00
IUUC-Stu-112727	Solanum tuberosum	72.83	0.00e+00	630.00
IUUC-Sbi-113971	Sorghum bicolor	58.97	2.00e-138	485.00
IUUC-Tca-121164	Theobroma cacao	78.12	0.00e+00	641.00
IUUC-Tae-123424	Triticum aestivum	55.56	3.00e-134	471.00
IUUC-Tur-126157	Triticum urartu	63.04	2.00e-53	202.00
IUUC-Vvi-131644	Vitis vinifera	81.84	2.00e-179	621.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence