iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099326

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-H2 zinc finger protein RHA2a

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_803581; POPTR_0008s12460g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s12460	POPTR_0008s12460.1	POPTR_0008s12460.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	7.80e-07	30.6	99	141

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C +Cl+ ++dg  ++ l+C Hvfh++C+  w     +   +f+CPlCr
   Q: 99   CVVCLCTLRDGdqVRKLDCRHVFHKECFDGW-----LDHLNFNCPLCR 141
           9*******55555******************.....7889*******8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGLQNQLNDV SSESIPLLLI AFIANCVACL RSFFFSVFHS VGVHRLDQAH VMDDRLMGSM 60
GSGLAGLIVL AEQRKLNRVF AYKYCCGRDD GNDKGGSDCV VCLCTLRDGD QVRKLDCRHV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCGCAAACT TCGACATCCA TAGCATCGCC TGCCCTCTAA AACCGAATTC TCTCTCCCTC 60
CCCCCCTATC TTTGGCTATT TATCAAACAC CTCTCTATAA ATCAAAACCA TCATCCTCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0008s12460g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002667	Amborella trichopoda	34.86	5.00e-22	96.70
IUUC-Aly-005399	Arabidopsis lyrata	52.80	4.00e-33	132.00
IUUC-Ath-007532	Arabidopsis thaliana	47.97	4.00e-32	130.00
IUUC-Afl-008599	Aspergillus flavus	50.00	4.00e-09	53.50
IUUC-Bol-015550	Brassica oleracea	53.79	4.00e-35	139.00
IUUC-Bra-017124	Brassica rapa	53.42	5.00e-36	142.00
IUUC-Gma-043050	Glycine max	54.17	7.00e-48	182.00
IUUC-Mtr-057686	Medicago truncatula	51.79	6.00e-47	179.00
IUUC-Mac-065273	Musa acuminata	50.93	9.00e-22	95.50
IUUC-Nfi-068442	Neosartorya fischeri	50.98	5.00e-10	56.20
IUUC-Ppe-101263	Prunus persica	55.49	5.00e-34	136.00
IUUC-Sit-110184	Setaria italica	45.59	2.00e-13	67.40
IUUC-Sly-111821	Solanum lycopersicum	56.47	8.00e-51	192.00
IUUC-Stu-112683	Solanum tuberosum	57.65	3.00e-52	196.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence