iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111221

Ensembl Protein ID

Solyc12g007230.1.1

UniProt Accession

G9HPV7; G9HPV7_SOLLC

Genbank Protein ID

AEX00352.1

Protein Name

Auxin-responsive protein

Genbank Nucleotide ID

JN379436

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc12g007230.1	Solyc12g007230.1.1	Solyc12g007230.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	3.80e-16	59.8	179	277

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 4    vkvsykgeirsfaldlekpgkfedLlkavrtlt..........................elknsevalkYeDedGDlvtlksDedldkavs 68
           vkvs++g+++++++dl  + +++dL +a++++                            l +se+al+YeD+dGD++ l++D++++++ +
   Q: 179  VKVSMDGAPYLRKVDLTMYNSYKDLSSALEKMFrcfkagqcetqgislsdglkeskladLLHGSEYALTYEDKDGDWM-LVGDVPWEMFTE 268
           9******************************3346779999*****************99999***************.************ PP
   S: 69   llaskksllrlliqk 83
                 s+++l+i+k
   Q: 269  ------SCKKLRIMK 277
           ......*******97 PP

Organism

Solanum lycopersicum

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MSISIEGNSD KSCVSSMDSK DLNFKATELR LGLPGSESPP DKNDYPLGVL KIFPSGAKRG 60
FSDTINGDSG RWGFGSEVDF VKNSSFIVSP KGVKVGNKIL GSVCNESSSV KEGTPKSPRP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTATAT CCATTGAAGG GAACTCTGAT AAGAGCTGTG TTTCATCAAT GGACAGTAAA 60
GATTTGAACT TTAAGGCAAC TGAACTTAGA CTAGGCTTGC CTGGTTCTGA ATCACCACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

sly:101055543

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002452	Amborella trichopoda	51.80	8.00e-74	270.00
IUUC-Aly-005481	Arabidopsis lyrata	44.94	2.00e-59	221.00
IUUC-Ath-007607	Arabidopsis thaliana	44.94	5.00e-59	220.00
IUUC-Bol-015732	Brassica oleracea	47.12	2.00e-62	231.00
IUUC-Gma-042909	Glycine max	58.04	7.00e-82	296.00
IUUC-Mtr-058756	Medicago truncatula	52.31	8.00e-71	259.00
IUUC-Mac-064563	Musa acuminata	57.71	9.00e-80	289.00
IUUC-Ome-081266	Oryza meridionalis	58.00	3.00e-47	180.00
IUUC-Opu-083799	Oryza punctata	61.90	4.00e-43	167.00
IUUC-Pop-099102	Populus trichocarpa	50.81	6.00e-70	256.00
IUUC-Ppe-101672	Prunus persica	48.15	3.00e-68	251.00
IUUC-Stu-112219	Solanum tuberosum	49.05	2.00e-65	241.00
IUUC-Tca-121602	Theobroma cacao	58.57	6.00e-83	299.00
IUUC-Vvi-131708	Vitis vinifera	53.09	5.00e-58	217.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence