iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121368

Ensembl Protein ID

EOX98803

UniProt Accession

A0A061E961; A0A061E961_THECC

Genbank Protein ID

EOX98803.1

Protein Name

WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related

Genbank Nucleotide ID

CM001880

Gene Name

TCM_007489

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_007489	EOX98803	EOX98803

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-39	132.8	444	479
UBD/Beta-Prp	1.50e-62	212.4	279	500

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           gH  +v +++f ++  +l++G+ D+t+++WDlr+ +
   Q: 444  GHVKPVLGVSFsPNgYHLATGGEDNTCRIWDLRKKK 479
           899*********77799***************9866 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           + +++   fs+d++llat s +g  k+w++ + ++++ l+gh++  t+v+fsp  + l+t+s Drt+k+w+ + g+ + t++gh d++  ++f+psg++l 
   Q: 279  DRPLSGCSFSRDGQLLATCSLSGVAKLWSMPRVSKVSALKGHTERATDVTFSPVHDHLATASADRTAKLWNTD-GSLLTTFEGHLDRLARIAFHPSGKYLG 378
           67888999***************************************************************86.7899*********************** PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqt 211
           ++s d+t r+wd+++g +l  +++gh+++v ++++h+dg+l +s++lD   r+Wdl+tg+ +  l+g h ++v  +sf++ng +l++g++d+t ++wdl++
   Q: 379  TTSFDKTWRLWDIDSGVELL-LQEGHSRSVYGIAFHQDGSLAASCGLDALARVWDLRTGRSVLALEG-HVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRK 477
           ********************.*********************************************9.********************************* PP
   S: 212  gecvrtlnghtdnvksvrfspnd 234
           ++ +++  +h++ +++v+f p++
   Q: 478  KKSLYIIPAHSNLISQVKFEPQE 500
           *******************9876 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MEVDDDNSPS TSSAEPSVAV PDSQTTVPTA NNTLLQPVQP IVPAVVPPAV VPPIAPLPAI 60
PPVPVVHPLA PLPIRAPILK PLAPQNGEVK TSDSDSDHED EGRTAAVDYE ISEESRLVRE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACATTTTCAA GGTAATGGCA ATAATGTTGT TCATTGTTAT CGTACCGATT AACTGCTGCT 60
TGAAGGGTTT TAGATTTTGA TTTTGTTGGC GACATCTTAA CTCACTTCAG CTTAATCTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0030529--C:intracellular ribonucleoprotein complex
GO:0019013--C:viral nucleocapsid

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	67.59	3.00e-172	597.00
IUUC-Aml-001737	Ailuropoda melanoleuca	44.56	6.00e-115	407.00
IUUC-Atr-002828	Amborella trichopoda	71.67	0.00e+00	671.00
IUUC-Apl-003723	Anas platyrhynchos	45.25	3.00e-115	407.00
IUUC-Aca-004972	Anolis carolinensis	45.93	8.00e-114	403.00
IUUC-Aly-006531	Arabidopsis lyrata	73.98	0.00e+00	645.00
IUUC-Ath-007367	Arabidopsis thaliana	72.61	0.00e+00	705.00
IUUC-Ago-007893	Ashbya gossypii	33.49	1.00e-58	219.00
IUUC-Acl-008236	Aspergillus clavatus	35.57	1.00e-75	276.00
IUUC-Afl-008522	Aspergillus flavus	36.07	2.00e-80	291.00
IUUC-Afu-008904	Aspergillus fumigatus	35.49	4.00e-82	298.00
IUUC-Ani-009198	Aspergillus nidulans	37.65	5.00e-83	301.00
IUUC-Ang-009662	Aspergillus niger	39.25	6.00e-84	303.00
IUUC-Aor-009881	Aspergillus oryzae	36.01	3.00e-79	288.00
IUUC-Ate-010333	Aspergillus terreus	37.21	6.00e-76	277.00
IUUC-Ame-011697	Astyanax mexicanus	43.58	3.00e-114	404.00
IUUC-Bgr-012254	Blumeria graminis	35.92	8.00e-82	296.00
IUUC-Bta-012615	Bos taurus	44.56	4.00e-115	407.00
IUUC-Bci-013720	Botrytis cinerea	36.38	2.00e-85	308.00
IUUC-Bdi-014302	Brachypodium distachyon	70.25	0.00e+00	636.00
IUUC-Bol-015594	Brassica oleracea	74.73	0.00e+00	677.00
IUUC-Bra-017465	Brassica rapa	72.71	0.00e+00	676.00
IUUC-Cel-018632	Caenorhabditis elegans	36.34	1.00e-75	276.00
IUUC-Cja-019747	Callithrix jacchus	44.56	3.00e-115	407.00
IUUC-Cfa-020288	Canis familiaris	44.56	5.00e-115	407.00
IUUC-Cpo-021440	Cavia porcellus	44.92	2.00e-114	405.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	50.56	1.00e-97	348.00
IUUC-Csa-023139	Chlorocebus sabaeus	50.97	2.00e-95	341.00
IUUC-Cho-024481	Choloepus hoffmanni	43.94	1.00e-112	399.00
IUUC-Cin-025106	Ciona intestinalis	38.51	4.00e-99	354.00
IUUC-Csv-026087	Ciona savignyi	41.92	8.00e-102	363.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	34.36	6.00e-81	295.00
IUUC-Cne-026793	Cryptococcus neoformans	37.82	4.00e-90	324.00
IUUC-Dre-028723	Danio rerio	42.86	1.00e-111	395.00
IUUC-Dno-029299	Dasypus novemcinctus	44.35	9.00e-115	406.00
IUUC-Dse-031562	Dothistroma septosporum	33.40	2.00e-74	272.00
IUUC-Dme-031783	Drosophila melanogaster	39.73	4.00e-88	318.00
IUUC-Ete-032669	Echinops telfairi	45.20	1.00e-116	412.00
IUUC-Eca-033566	Equus caballus	44.56	6.00e-115	407.00
IUUC-Eeu-034524	Erinaceus europaeus	52.56	5.00e-75	274.00
IUUC-Fca-036215	Felis catus	44.56	4.00e-115	407.00
IUUC-Fal-037018	Ficedula albicollis	44.62	3.00e-95	341.00
IUUC-Fox-037936	Fusarium oxysporum	33.94	1.00e-71	263.00
IUUC-Fso-038366	Fusarium solani	33.75	4.00e-77	281.00
IUUC-Gmo-038966	Gadus morhua	45.24	3.00e-86	311.00
IUUC-Ggr-039942	Gaeumannomyces graminis	33.33	1.00e-71	263.00
IUUC-Gga-040797	Gallus gallus	42.77	6.00e-116	410.00
IUUC-Gac-042598	Gasterosteus aculeatus	44.03	3.00e-102	364.00
IUUC-Gma-044220	Glycine max	83.87	0.00e+00	734.00
IUUC-Ggo-044682	Gorilla gorilla	44.71	6.00e-115	407.00
IUUC-Hsa-045804	Homo sapiens	44.56	3.00e-115	407.00
IUUC-Hvu-047567	Hordeum vulgare	67.13	2.00e-167	581.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	44.78	1.00e-115	409.00
IUUC-Kpa-049369	Komagataella pastoris	32.88	4.00e-54	204.00
IUUC-Lch-050074	Latimeria chalumnae	43.39	1.00e-103	369.00
IUUC-Lpe-051333	Leersia perrieri	66.90	8.00e-163	565.00
IUUC-Loc-052164	Lepisosteus oculatus	44.25	5.00e-114	403.00
IUUC-Lma-053088	Leptosphaeria maculans	36.97	3.00e-74	271.00
IUUC-Laf-053460	Loxodonta africana	44.56	3.00e-115	407.00
IUUC-Mcc-055859	Macaca mulatta	44.56	4.00e-115	407.00
IUUC-Meu-056134	Macropus eugenii	44.56	2.00e-114	405.00
IUUC-Mor-057251	Magnaporthe oryzae	34.98	5.00e-78	284.00
IUUC-Mpo-057375	Magnaporthe poae	38.65	1.00e-51	195.00
IUUC-Mtr-057656	Medicago truncatula	76.70	0.00e+00	661.00
IUUC-Mla-059145	Melampsora laricipopulina	40.04	4.00e-85	307.00
IUUC-Mga-059855	Meleagris gallopavo	42.66	3.00e-116	411.00
IUUC-Mvi-060372	Microbotryum violaceum	41.21	9.00e-79	286.00
IUUC-Mmr-060826	Microcebus murinus	44.78	2.00e-115	408.00
IUUC-Mdo-062748	Monodelphis domestica	44.78	2.00e-114	405.00
IUUC-Mmu-063351	Mus musculus	44.78	4.00e-115	407.00
IUUC-Mac-064846	Musa acuminata	74.60	3.00e-180	623.00
IUUC-Mpu-066006	Mustela putorius furo	44.56	4.00e-115	407.00
IUUC-Mlu-067398	Myotis lucifugus	44.56	5.00e-115	407.00
IUUC-Nfi-068399	Neosartorya fischeri	35.52	5.00e-84	304.00
IUUC-Ncr-068711	Neurospora crassa	36.05	4.00e-83	301.00
IUUC-Nle-069982	Nomascus leucogenys	44.56	3.00e-115	407.00
IUUC-Opr-070596	Ochotona princeps	44.49	1.00e-114	405.00
IUUC-Ont-072374	Oreochromis niloticus	45.96	2.00e-106	378.00
IUUC-Oan-073166	Ornithorhynchus anatinus	47.51	1.00e-98	352.00
IUUC-Ocu-074371	Oryctolagus cuniculus	44.35	1.00e-114	406.00
IUUC-Oba-075083	Oryza barthii	67.95	6.00e-174	603.00
IUUC-Obr-076405	Oryza brachyantha	68.74	6.00e-167	579.00
IUUC-Ogl-077683	Oryza glaberrima	68.17	1.00e-173	601.00
IUUC-Ogu-078486	Oryza glumaepatula	68.39	6.00e-174	603.00
IUUC-Oin-079679	Oryza indica	68.39	3.00e-177	614.00
IUUC-Olo-080243	Oryza longistaminata	68.06	6.00e-153	532.00
IUUC-Ome-081230	Oryza meridionalis	68.39	1.00e-177	615.00
IUUC-Oni-082961	Oryza nivara	68.39	2.00e-177	614.00
IUUC-Opu-083189	Oryza punctata	67.53	2.00e-177	614.00
IUUC-Oru-084353	Oryza rufipogon	68.97	3.00e-171	593.00
IUUC-Osa-085458	Oryza sativa	68.39	1.00e-177	615.00
IUUC-Ola-086940	Oryzias latipes	44.67	2.00e-110	391.00
IUUC-Olu-087580	Ostreococcus lucimarinus	41.30	1.00e-77	283.00
IUUC-Oga-088703	Otolemur garnettii	42.52	1.00e-108	385.00
IUUC-Oar-089829	Ovis aries	44.78	2.00e-115	408.00
IUUC-Ptr-090838	Pan troglodytes	44.56	3.00e-115	407.00
IUUC-Pan-092261	Papio anubis	44.47	2.00e-113	402.00
IUUC-Psi-093020	Pelodiscus sinensis	44.18	4.00e-113	400.00
IUUC-Pno-094858	Phaeosphaeria nodorum	36.33	8.00e-76	276.00
IUUC-Ppa-095531	Physcomitrella patens	62.18	9.00e-171	592.00
IUUC-Pfo-096812	Poecilia formosa	42.00	2.00e-89	322.00
IUUC-Pab-097805	Pongo abelii	47.24	7.00e-95	340.00
IUUC-Pop-100051	Populus trichocarpa	81.63	0.00e+00	731.00
IUUC-Pca-100152	Procavia capensis	44.35	9.00e-115	406.00
IUUC-Ppe-101244	Prunus persica	79.01	0.00e+00	642.00
IUUC-Pva-102529	Pteropus vampyrus	42.86	1.00e-107	382.00
IUUC-Pgr-103550	Puccinia graminis	35.94	4.00e-89	321.00
IUUC-Ptt-103951	Puccinia triticina	31.27	4.00e-72	264.00
IUUC-Pte-104151	Pyrenophora teres	33.90	9.00e-68	250.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	33.75	3.00e-68	251.00
IUUC-Rno-105747	Rattus norvegicus	44.99	2.00e-115	409.00
IUUC-Sce-106418	Saccharomyces cerevisiae	33.04	3.00e-60	224.00
IUUC-Sha-107334	Sarcophilus harrisii	44.56	2.00e-114	405.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	33.47	3.00e-64	238.00
IUUC-Spo-108189	Schizosaccharomyces pombe	39.12	1.00e-84	306.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	36.16	1.00e-85	310.00
IUUC-Smo-109578	Selaginella moellendorffii	63.82	1.00e-164	572.00
IUUC-Sit-110102	Setaria italica	68.17	1.00e-177	615.00
IUUC-Sly-111668	Solanum lycopersicum	75.66	0.00e+00	687.00
IUUC-Stu-111928	Solanum tuberosum	76.06	0.00e+00	697.00
IUUC-Sar-113266	Sorex araneus	39.78	1.00e-97	349.00
IUUC-Sbi-114134	Sorghum bicolor	68.37	2.00e-179	620.00
IUUC-Sre-115114	Sporisorium reilianum	38.49	1.00e-88	319.00
IUUC-Ssc-115443	Sus scrofa	44.56	7.00e-115	406.00
IUUC-Tgu-117157	Taeniopygia guttata	45.70	1.00e-116	412.00
IUUC-Tru-118587	Takifugu rubripes	46.67	2.00e-110	392.00
IUUC-Tsy-119157	Tarsius syrichta	48.07	2.00e-101	362.00
IUUC-Tni-120427	Tetraodon nigroviridis	46.42	2.00e-109	388.00
IUUC-Tre-122074	Trichoderma reesei	35.13	9.00e-79	286.00
IUUC-Tvi-122349	Trichoderma virens	34.22	6.00e-76	277.00
IUUC-Tae-125651	Triticum aestivum	67.56	5.00e-177	613.00
IUUC-Tur-126532	Triticum urartu	69.15	9.00e-155	539.00
IUUC-Tme-126951	Tuber melanosporum	37.62	2.00e-79	289.00
IUUC-Tbe-128136	Tupaia belangeri	40.77	1.00e-100	359.00
IUUC-Ttr-129169	Tursiops truncatus	37.42	6.00e-52	197.00
IUUC-Uma-129399	Ustilago maydis	37.83	8.00e-86	310.00
IUUC-Vda-129842	Verticillium dahliae	35.54	2.00e-83	302.00
IUUC-Vpa-130440	Vicugna pacos	44.56	2.00e-115	408.00
IUUC-Vvi-131075	Vitis vinifera	82.52	0.00e+00	689.00
IUUC-Xma-133002	Xiphophorus maculatus	48.02	4.00e-96	343.00
IUUC-Yli-134569	Yarrowia lipolytica	34.87	3.00e-70	258.00
IUUC-Zma-135799	Zea mays	63.78	3.00e-175	607.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence