iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099994

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000348

Gene Name

POPTRDRAFT_1095788; POPTR_0012s13800g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0012s13800	POPTR_0012s13800.1	POPTR_0012s13800.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-27	95.4	165	202

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH+  ++++a+ s+ + l +Gs D t++vWD  +g ++
   Q: 165  GHQKVISGIALpSGsDKLYTGSKDETVRVWDCQSGQCT 202
           89*********966799****************99996 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDLDYNGGNT TNTNKRVFHR LGGGKSVNDT SNQHNHQHQQ NQKVCYHWRA GKCNRFPCPF 60
LHRELPAPPP HASVNGGGGG GGGAKRGFAG NDSSSFSGRR GGNSNYSNSW GRFGNKGDVR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAAGAACTC CAGAATTAGG GTTTCTAATT AAACCCTAAA TTCCCTACGA ATTCGAACAA 60
TTGAGTTAGG TTTTTCATGA TCAGGTTCAA TTCGAAGAAT TCGATTCGAA AAATCCAATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0046872--F:metal ion binding

KEGG

pop:POPTR_0012s13800g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002831	Amborella trichopoda	56.50	2.00e-145	508.00
IUUC-Aly-005699	Arabidopsis lyrata	67.48	2.00e-174	604.00
IUUC-Ath-007223	Arabidopsis thaliana	68.61	1.00e-179	621.00
IUUC-Bdi-014857	Brachypodium distachyon	57.98	1.00e-146	511.00
IUUC-Bra-017102	Brassica rapa	66.37	1.00e-172	598.00
IUUC-Cre-022574	Chlamydomonas reinhardtii	28.09	1.00e-25	109.00
IUUC-Gma-042894	Glycine max	66.23	6.00e-167	579.00
IUUC-Hvu-047824	Hordeum vulgare	62.54	1.00e-115	409.00
IUUC-Lpe-051596	Leersia perrieri	51.91	4.00e-123	434.00
IUUC-Mac-065071	Musa acuminata	65.05	2.00e-162	564.00
IUUC-Oba-075769	Oryza barthii	51.35	6.00e-125	440.00
IUUC-Ogu-078248	Oryza glumaepatula	52.00	7.00e-127	446.00
IUUC-Oin-079981	Oryza indica	58.80	8.00e-152	529.00
IUUC-Olo-080571	Oryza longistaminata	50.93	2.00e-116	412.00
IUUC-Ome-081598	Oryza meridionalis	51.45	1.00e-124	439.00
IUUC-Oni-082711	Oryza nivara	51.45	5.00e-125	440.00
IUUC-Opu-083451	Oryza punctata	56.03	1.00e-147	515.00
IUUC-Oru-085129	Oryza rufipogon	51.35	9.00e-124	436.00
IUUC-Osa-085619	Oryza sativa	55.03	9.00e-109	385.00
IUUC-Ppa-096012	Physcomitrella patens	54.74	5.00e-108	384.00
IUUC-Ppe-101609	Prunus persica	70.42	0.00e+00	644.00
IUUC-Smo-109306	Selaginella moellendorffii	55.41	4.00e-97	347.00
IUUC-Sit-109731	Setaria italica	59.71	3.00e-143	501.00
IUUC-Sly-111514	Solanum lycopersicum	66.67	8.00e-159	552.00
IUUC-Stu-112646	Solanum tuberosum	65.27	4.00e-164	570.00
IUUC-Sbi-114748	Sorghum bicolor	57.81	3.00e-146	510.00
IUUC-Tca-121658	Theobroma cacao	69.26	3.00e-173	600.00
IUUC-Tae-125577	Triticum aestivum	61.60	5.00e-148	516.00
IUUC-Tur-126095	Triticum urartu	53.68	3.00e-83	302.00
IUUC-Vvi-131444	Vitis vinifera	69.18	0.00e+00	630.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence