iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.60e-08	35.1	142	184

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++f   + +++lp C+H+fh+ C+  w       + + +CPlCr
   Q: 142  CSVCLSEFeeNESLRLLPkCNHAFHLPCIDTW------LKSHSNCPLCR 184
           ********5533499999**************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSTNPNPWSP YDSYNDCSQG ICNIYCPQWC YLIFPPPPPS FFLDDDSSSS SSSFSPLLIA 60
LIGILTSALI LVSYYTLISK YCHRHHQTSS SETLNLNHNG EGFFSSTQRI STNGDGLNES 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTTCAAAA ACAATTTTAA ATCATATTTA TGTTTCAATA CTGATGCATT CAACTTTACT 60
TTATATGAAC AGATATTATA TAAAATAATT TGTAAATAGT AATACGTAAA CCCGCACGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G17600

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002971	Amborella trichopoda	41.58	6.00e-56	210.00
IUUC-Aly-006272	Arabidopsis lyrata	87.81	1.00e-155	541.00
IUUC-Bdi-014160	Brachypodium distachyon	40.56	6.00e-49	187.00
IUUC-Bol-015947	Brassica oleracea	59.14	2.00e-90	325.00
IUUC-Bra-017128	Brassica rapa	61.05	2.00e-104	371.00
IUUC-Cin-025552	Ciona intestinalis	39.08	8.00e-16	75.50
IUUC-Gma-042838	Glycine max	45.37	1.00e-54	206.00
IUUC-Hvu-047701	Hordeum vulgare	41.18	4.00e-50	191.00
IUUC-Mac-065580	Musa acuminata	38.61	1.00e-52	199.00
IUUC-Oba-075056	Oryza barthii	55.50	5.00e-49	187.00
IUUC-Ogu-078989	Oryza glumaepatula	55.50	6.00e-49	187.00
IUUC-Oin-079716	Oryza indica	55.50	5.00e-49	187.00
IUUC-Ome-081279	Oryza meridionalis	54.73	9.00e-49	186.00
IUUC-Oni-082896	Oryza nivara	55.50	5.00e-49	187.00
IUUC-Opu-083796	Oryza punctata	54.23	7.00e-49	187.00
IUUC-Oru-084594	Oryza rufipogon	56.00	2.00e-49	189.00
IUUC-Osa-086004	Oryza sativa	56.00	2.00e-49	189.00
IUUC-Ppa-095182	Physcomitrella patens	39.74	9.00e-28	117.00
IUUC-Ppe-101180	Prunus persica	43.11	3.00e-62	231.00
IUUC-Sly-110835	Solanum lycopersicum	41.51	9.00e-55	206.00
IUUC-Stu-112220	Solanum tuberosum	41.94	9.00e-58	216.00
IUUC-Sbi-114789	Sorghum bicolor	40.26	8.00e-52	196.00
IUUC-Tca-120979	Theobroma cacao	44.50	5.00e-73	267.00
IUUC-Tae-123315	Triticum aestivum	39.94	1.00e-49	189.00
IUUC-Vvi-130829	Vitis vinifera	41.05	7.00e-52	196.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence