iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sit-110119

Ensembl Protein ID

Si022875m

UniProt Accession

K3Z8K5; K3Z8K5_SETIT

Genbank Protein ID

KQL13453.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

CM003530

Gene Name

LOC101762537; SETIT_022875mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si022875m.g	Si022875m	Si022875m
Si022875m.g	Si023151m	Si023151m

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	39.54	1.00e-47	187.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Setaria italica

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MATSPALLFP STSSSSSPSS ARVEAVVLFN ICDSYVRRPD QADRVIGTLL GSLLPDGTVH 60
VRNSYVVPHS ESADQVAIDI EYHHNMYASH QKVNPKEVIV GWFSTGFGVS GGSTLIHDFY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCAGCGCCA CACCCAACGG GGACCCCTTC TCTCTCCGTC GCGCCGCCGC CCCCGCAGGC 60
CGCCGCAGCA GAAGCAAGCC TCCTCCGATT CGCTCGCCCT CCGTCGAGAC CATGGCGACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0005829--C:cytosol
GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0016020--C:membrane
GO:0005634--C:nucleus
GO:0003743--F:translation initiation factor activity
GO:0009793--P:embryo development ending in seed dormancy
GO:0001731--P:formation of translation preinitiation complex
GO:0009846--P:pollen germination
GO:0006446--P:regulation of translational initiation
GO:0009744--P:response to sucrose

KEGG

sita:101762537

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	79.22	2.00e-126	444.00
IUUC-Aml-001527	Ailuropoda melanoleuca	39.54	2.00e-55	209.00
IUUC-Atr-002686	Amborella trichopoda	72.18	1.00e-104	372.00
IUUC-Apl-003977	Anas platyrhynchos	37.10	1.00e-45	175.00
IUUC-Aca-004335	Anolis carolinensis	39.16	8.00e-57	213.00
IUUC-Aly-005945	Arabidopsis lyrata	72.08	8.00e-111	392.00
IUUC-Ath-007045	Arabidopsis thaliana	71.32	3.00e-109	387.00
IUUC-Acl-008365	Aspergillus clavatus	35.02	5.00e-44	171.00
IUUC-Afl-008742	Aspergillus flavus	36.03	5.00e-43	167.00
IUUC-Afu-009030	Aspergillus fumigatus	35.02	4.00e-44	171.00
IUUC-Ani-009212	Aspergillus nidulans	35.38	7.00e-44	170.00
IUUC-Ang-009712	Aspergillus niger	35.74	7.00e-44	170.00
IUUC-Aor-009885	Aspergillus oryzae	36.03	4.00e-44	171.00
IUUC-Ate-010315	Aspergillus terreus	35.38	7.00e-43	167.00
IUUC-Ame-010801	Astyanax mexicanus	51.81	3.00e-20	91.30
IUUC-Bgr-011982	Blumeria graminis	35.66	2.00e-42	165.00
IUUC-Bta-012804	Bos taurus	39.54	2.00e-55	209.00
IUUC-Bci-013891	Botrytis cinerea	34.06	9.00e-36	143.00
IUUC-Bdi-014328	Brachypodium distachyon	84.59	8.00e-126	442.00
IUUC-Bol-015446	Brassica oleracea	72.93	8.00e-114	402.00
IUUC-Bra-016862	Brassica rapa	72.18	2.00e-112	397.00
IUUC-Cel-018171	Caenorhabditis elegans	26.67	5.00e-25	107.00
IUUC-Cja-019335	Callithrix jacchus	39.54	2.00e-55	209.00
IUUC-Cfa-020138	Canis familiaris	39.16	4.00e-55	207.00
IUUC-Cpo-022109	Cavia porcellus	36.30	4.00e-45	174.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	43.01	3.00e-62	230.00
IUUC-Csa-023994	Chlorocebus sabaeus	39.54	2.00e-55	209.00
IUUC-Cho-024351	Choloepus hoffmanni	30.42	6.00e-32	130.00
IUUC-Cin-025801	Ciona intestinalis	37.88	4.00e-52	197.00
IUUC-Csv-025805	Ciona savignyi	38.26	3.00e-52	197.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	30.07	2.00e-34	139.00
IUUC-Cne-026868	Cryptococcus neoformans	29.76	5.00e-24	103.00
IUUC-Cme-027328	Cyanidioschyzon merolae	26.10	4.00e-19	87.80
IUUC-Dre-028085	Danio rerio	40.00	5.00e-55	206.00
IUUC-Dno-030099	Dasypus novemcinctus	39.54	2.00e-55	208.00
IUUC-Dor-030324	Dipodomys ordii	35.74	3.00e-46	178.00
IUUC-Dse-031314	Dothistroma septosporum	35.04	4.00e-44	171.00
IUUC-Dme-031926	Drosophila melanogaster	38.20	3.00e-51	194.00
IUUC-Ete-032569	Echinops telfairi	38.93	1.00e-51	195.00
IUUC-Eca-033502	Equus caballus	37.64	2.00e-50	192.00
IUUC-Eeu-034883	Erinaceus europaeus	31.32	1.00e-24	105.00
IUUC-Fca-035873	Felis catus	39.54	1.00e-55	209.00
IUUC-Fal-036921	Ficedula albicollis	39.54	4.00e-56	210.00
IUUC-Fox-037765	Fusarium oxysporum	30.32	7.00e-28	117.00
IUUC-Fso-038240	Fusarium solani	30.69	6.00e-29	120.00
IUUC-Gmo-038864	Gadus morhua	39.62	1.00e-56	212.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.60	1.00e-29	123.00
IUUC-Gga-040952	Gallus gallus	39.54	6.00e-56	210.00
IUUC-Gac-041677	Gasterosteus aculeatus	41.13	4.00e-60	223.00
IUUC-Gma-043061	Glycine max	76.32	5.00e-109	386.00
IUUC-Ggo-045591	Gorilla gorilla	39.54	2.00e-55	209.00
IUUC-Hsa-046860	Homo sapiens	39.54	2.00e-55	209.00
IUUC-Hvu-047410	Hordeum vulgare	87.16	2.00e-75	273.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	39.92	4.00e-56	211.00
IUUC-Lch-049410	Latimeria chalumnae	50.00	4.00e-35	140.00
IUUC-Lpe-051102	Leersia perrieri	91.47	1.00e-132	464.00
IUUC-Loc-052016	Lepisosteus oculatus	36.50	3.00e-46	177.00
IUUC-Lma-053157	Leptosphaeria maculans	33.58	1.00e-43	169.00
IUUC-Laf-054568	Loxodonta africana	39.54	3.00e-55	208.00
IUUC-Mcc-054613	Macaca mulatta	39.54	2.00e-55	209.00
IUUC-Meu-056832	Macropus eugenii	22.71	6.00e-17	79.70
IUUC-Mor-057104	Magnaporthe oryzae	29.96	2.00e-30	125.00
IUUC-Mtr-058445	Medicago truncatula	75.56	3.00e-124	437.00
IUUC-Mla-059038	Melampsora laricipopulina	31.23	1.00e-33	135.00
IUUC-Mga-059548	Meleagris gallopavo	37.89	3.00e-48	184.00
IUUC-Mvi-060520	Microbotryum violaceum	26.26	8.00e-22	97.10
IUUC-Mdo-062376	Monodelphis domestica	38.78	1.00e-55	209.00
IUUC-Mmu-063254	Mus musculus	39.92	3.00e-56	211.00
IUUC-Mac-065635	Musa acuminata	73.48	2.00e-113	400.00
IUUC-Mpu-066314	Mustela putorius furo	39.54	1.00e-55	209.00
IUUC-Mlu-067512	Myotis lucifugus	39.54	8.00e-56	210.00
IUUC-Nfi-068262	Neosartorya fischeri	35.02	3.00e-44	171.00
IUUC-Ncr-068872	Neurospora crassa	30.22	6.00e-32	130.00
IUUC-Nle-070118	Nomascus leucogenys	39.54	1.00e-55	209.00
IUUC-Opr-071228	Ochotona princeps	37.89	4.00e-48	183.00
IUUC-Ont-072600	Oreochromis niloticus	39.16	7.00e-59	219.00
IUUC-Oan-073584	Ornithorhynchus anatinus	37.44	7.00e-48	182.00
IUUC-Ocu-074542	Oryctolagus cuniculus	39.54	5.00e-56	210.00
IUUC-Oba-075923	Oryza barthii	89.82	6.00e-137	479.00
IUUC-Obr-076313	Oryza brachyantha	92.25	3.00e-132	463.00
IUUC-Ogl-076932	Oryza glaberrima	89.82	6.00e-137	479.00
IUUC-Ogu-078152	Oryza glumaepatula	89.82	6.00e-137	479.00
IUUC-Oin-079528	Oryza indica	89.82	6.00e-137	479.00
IUUC-Olo-080401	Oryza longistaminata	89.82	6.00e-137	479.00
IUUC-Ome-081553	Oryza meridionalis	89.47	2.00e-136	477.00
IUUC-Oni-082090	Oryza nivara	89.82	6.00e-137	479.00
IUUC-Opu-083583	Oryza punctata	92.64	1.00e-132	464.00
IUUC-Oru-084492	Oryza rufipogon	89.82	6.00e-137	479.00
IUUC-Osa-085383	Oryza sativa	89.82	6.00e-137	479.00
IUUC-Ola-086835	Oryzias latipes	39.54	9.00e-59	219.00
IUUC-Olu-087716	Ostreococcus lucimarinus	35.93	3.00e-42	164.00
IUUC-Oga-088886	Otolemur garnettii	39.16	2.00e-55	209.00
IUUC-Oar-090079	Ovis aries	39.54	1.00e-55	209.00
IUUC-Ptr-091457	Pan troglodytes	39.54	2.00e-55	209.00
IUUC-Pan-092317	Papio anubis	34.07	1.00e-30	125.00
IUUC-Psi-093129	Pelodiscus sinensis	35.69	6.00e-49	187.00
IUUC-Pma-094488	Petromyzon marinus	40.68	7.00e-60	223.00
IUUC-Pno-095049	Phaeosphaeria nodorum	33.58	8.00e-45	173.00
IUUC-Ppa-095341	Physcomitrella patens	60.15	9.00e-103	365.00
IUUC-Pfo-096286	Poecilia formosa	39.62	3.00e-58	217.00
IUUC-Pab-097765	Pongo abelii	39.54	2.00e-55	209.00
IUUC-Pop-099131	Populus trichocarpa	75.56	3.00e-118	416.00
IUUC-Pca-100524	Procavia capensis	30.97	5.00e-31	126.00
IUUC-Ppe-101934	Prunus persica	76.32	4.00e-126	442.00
IUUC-Pva-102577	Pteropus vampyrus	39.92	4.00e-56	211.00
IUUC-Pgr-103521	Puccinia graminis	29.70	1.00e-32	132.00
IUUC-Pte-104304	Pyrenophora teres	33.58	1.00e-44	173.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	33.58	2.00e-44	172.00
IUUC-Rno-105717	Rattus norvegicus	39.92	2.00e-56	211.00
IUUC-Sha-107190	Sarcophilus harrisii	39.00	1.00e-54	206.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	34.06	2.00e-41	161.00
IUUC-Spo-108355	Schizosaccharomyces pombe	32.97	1.00e-40	159.00
IUUC-Smo-109374	Selaginella moellendorffii	62.78	5.00e-106	376.00
IUUC-Sly-111570	Solanum lycopersicum	74.81	8.00e-105	372.00
IUUC-Stu-112308	Solanum tuberosum	73.68	6.00e-113	399.00
IUUC-Sar-113515	Sorex araneus	35.79	3.00e-14	70.50
IUUC-Sbi-114605	Sorghum bicolor	97.74	5.00e-142	496.00
IUUC-Sre-114906	Sporisorium reilianum	35.71	7.00e-43	166.00
IUUC-Tgu-117087	Taeniopygia guttata	37.44	7.00e-48	182.00
IUUC-Tru-117700	Takifugu rubripes	40.30	8.00e-61	226.00
IUUC-Tni-120470	Tetraodon nigroviridis	39.54	1.00e-58	218.00
IUUC-Tca-121109	Theobroma cacao	77.07	2.00e-110	390.00
IUUC-Tre-122095	Trichoderma reesei	30.58	1.00e-29	122.00
IUUC-Tvi-122580	Trichoderma virens	30.22	8.00e-29	120.00
IUUC-Tae-125129	Triticum aestivum	87.59	2.00e-133	467.00
IUUC-Tur-126658	Triticum urartu	76.47	4.00e-120	423.00
IUUC-Tme-127043	Tuber melanosporum	34.80	4.00e-43	167.00
IUUC-Tbe-127927	Tupaia belangeri	39.54	1.00e-55	209.00
IUUC-Ttr-129231	Tursiops truncatus	39.54	1.00e-55	209.00
IUUC-Uma-129578	Ustilago maydis	35.71	7.00e-42	163.00
IUUC-Vda-129730	Verticillium dahliae	30.43	1.00e-33	136.00
IUUC-Vpa-130677	Vicugna pacos	58.62	6.00e-03	34.30
IUUC-Vvi-130968	Vitis vinifera	75.47	9.00e-116	408.00
IUUC-Xtr-132203	Xenopus tropicalis	39.16	2.00e-53	202.00
IUUC-Xma-133972	Xiphophorus maculatus	39.62	4.00e-58	217.00
IUUC-Yli-134553	Yarrowia lipolytica	32.47	2.00e-34	138.00
IUUC-Zma-134941	Zea mays	95.09	2.00e-129	454.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence