iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.3__1744__AT3G15880.2	fgenesh2_kg.3__1744__AT3G15880.2	fgenesh2_kg.3__1744__AT3G15880.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-23	81.3	462	502
UBD/Beta-Prp	8.40e-54	183.4	398	670

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtgvllks 38
           H++ v++laf  ++  l +v+++ D+tikvWD  tg++l++
   Q: 462  HAGNVNDLAFsqPNqQLcVVTCGEDKTIKVWDAVTGNKLHT 502
           99********99665444799***************99875 PP

UBD/Beta-Prp

   S: 35   kvwdvttgkl..lrsl.sgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlk...ghedsvlslsfsp. 104
           kvwd+ t ++   +sl s+ +a+v+ v +spdg +l  + + ++++++++  g+ ++      +h  +v +l+fs+ 
   Q: 398  KVWDLATCTVnlQASLaSEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLeidAHAGNVNDLAFSQp 474
           67777665445467776777777777777777777777777777777777766655543224477777777777776 PP
   S: 105  sg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg..nllvsGslDrtvrlWdlktgkllrtltgg 178
           ++   +v+ ++d+ti+vwd  tg +l+ t++gh++ v +v+ h+++  + ++s + D++++ W   ++    +    
   Q: 475  NQqLCVVTCGEDKTIKVWDAVTGNKLH-TFEGHEAPVYSVCPHQKEniQFIFSTAVDGKIKAWLYDNMGSRVDYDA- 549
           433667777777777777777777777.777777777777777776455677777777777777755555555554. PP
   S: 179  htdsvyslsfdsngkelvsgsldg....tvklwdlqtgecvrtlng.htdnvksvrfspnderlvsgssDgsiriWd 250
             +s + +++  +g++l s+++ +     +  w+ ++g + rt+ g  ++   +v+f+  ++ +++++++ ++++Wd
   Q: 550  PGRSCTAMAYCADGTRLFSCGTSKegesFIVEWNESEGAVKRTYLGlGKRSAGVVQFDTMKNKFLVAGDEFQVKFWD 626
           67777777777777777777664311114666666677777777775566667777776666666677777777777 PP
   S: 251  lrsgdllktlqlhnssvisvavlsfg.dnvlvlgse.dskvniwk 293
           ++s dll++++ +   + s+ +l+++ +  l+++s  d+ ++i++
   Q: 627  MDSVDLLSSTAAEG-GLPSSPCLRINkEGTLLAVSTtDNGIKILA 670
           77777777776644.344444444442222222222355555544 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVEILVKE LKVFSTFNEE LFKEITMLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCATAAATAG CCCCCACGTC TCTCTCTCTC TTCTCCGAAG TCTTCTTCTT CTTCTTCCTT 60
CTCTCTGCTT CGTCGTCTCT CTCCTTCTTC AAAGTCAAAA TTCAACAGGT ATAATTATAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006595--CTLH_C
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

KEGG

aly:ARALYDRAFT_479043

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007634	Arabidopsis thaliana	98.41	0.00e+00	2160.00
IUUC-Bol-015812	Brassica oleracea	94.54	0.00e+00	2136.00
IUUC-Bra-016964	Brassica rapa	93.74	0.00e+00	2092.00
IUUC-Gma-043971	Glycine max	75.04	0.00e+00	1695.00
IUUC-Mtr-058586	Medicago truncatula	74.91	0.00e+00	1692.00
IUUC-Pop-099918	Populus trichocarpa	74.40	0.00e+00	1682.00
IUUC-Ppe-101506	Prunus persica	75.36	0.00e+00	1704.00
IUUC-Sly-111451	Solanum lycopersicum	76.52	0.00e+00	1758.00
IUUC-Stu-112409	Solanum tuberosum	71.54	0.00e+00	1617.00
IUUC-Tca-121699	Theobroma cacao	74.62	0.00e+00	1724.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence