iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Itr-047934

Ensembl Protein ID

ENSSTOP00000001909.2

UniProt Accession

I3LZV0; I3LZV0_ICTTR

Genbank Protein ID

ENSSTOP00000001909

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AGTP01072702

Gene Name

LDB1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSTOG00000002139.2	ENSSTOT00000002143.2	ENSSTOP00000001909.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/U-box	62.39	2.00e-124	442.00	IUUC-Dme-031667

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Ictidomys tridecemlineatus

Protein Sequence
(Fasta)

MSVGCACPGC SSKSFKLYSP KEPPNGNAFP PFHPGTMLDR DVGPTPMYPP TYLEPGIGRH 60
TPYGNQTDYR IFELNKRLQN WTEECDNLWW DAFTTEFFED DAMLTITFCL EDGPKRYTIG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCAGTGG GCTGTGCCTG TCCTGGTGAG TGGGTTGCGC GGCTGCCTGG CCCCTCCCTT 60
CCTAACCTTC CCTTTGAGCC CCTTACCCCT TGTTTGGGGA GAACTTGGGT GGAGGGCATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR030167--LDB1
IPR029005--LIM-bd/SEUSS

Gene Ontology

GO:0031252--C:cell leading edge
GO:0000790--C:nuclear chromatin
GO:0005667--C:transcription factor complex
GO:0003682--F:chromatin binding
GO:0001158--F:enhancer sequence-specific DNA binding
GO:0000989--F:transcription factor activity, transcription factor binding
GO:0009948--P:anterior/posterior axis specification
GO:0022607--P:cellular component assembly
GO:0021702--P:cerebellar Purkinje cell differentiation
GO:0010669--P:epithelial structure maintenance
GO:0001702--P:gastrulation with mouth forming second
GO:0001942--P:hair follicle development
GO:0043973--P:histone H3-K4 acetylation
GO:0045647--P:negative regulation of erythrocyte differentiation
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0045785--P:positive regulation of cell adhesion
GO:0046985--P:positive regulation of hemoglobin biosynthetic process
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0030334--P:regulation of cell migration
GO:0032784--P:regulation of DNA-templated transcription, elongation
GO:0051893--P:regulation of focal adhesion assembly
GO:0043549--P:regulation of kinase activity
GO:0035019--P:somatic stem cell population maintenance
GO:0006366--P:transcription from RNA polymerase II promoter
GO:0000972--P:transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0016055--P:Wnt signaling pathway

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000177	Aegilops tauschii	25.90	1.00e-04	42.00
IUUC-Aml-002031	Ailuropoda melanoleuca	99.03	0.00e+00	764.00
IUUC-Atr-003083	Amborella trichopoda	23.53	2.00e-04	41.20
IUUC-Apl-004210	Anas platyrhynchos	97.26	3.00e-177	613.00
IUUC-Aca-005241	Anolis carolinensis	99.03	0.00e+00	771.00
IUUC-Aly-006204	Arabidopsis lyrata	23.94	1.00e-06	48.50
IUUC-Ath-007339	Arabidopsis thaliana	23.94	1.00e-06	48.50
IUUC-Acl-008255	Aspergillus clavatus	20.63	1.00e-06	48.10
IUUC-Ame-010910	Astyanax mexicanus	94.66	0.00e+00	734.00
IUUC-Bgr-012180	Blumeria graminis	22.08	4.00e-05	43.10
IUUC-Bta-012596	Bos taurus	73.67	2.00e-153	534.00
IUUC-Bci-013927	Botrytis cinerea	26.03	2.00e-06	48.10
IUUC-Bol-015721	Brassica oleracea	24.48	3.00e-07	50.40
IUUC-Bra-017183	Brassica rapa	24.48	3.00e-07	50.40
IUUC-Cel-018189	Caenorhabditis elegans	33.19	3.00e-29	123.00
IUUC-Cja-019586	Callithrix jacchus	75.71	9.00e-159	552.00
IUUC-Cfa-021188	Canis familiaris	99.03	0.00e+00	763.00
IUUC-Cpo-022350	Cavia porcellus	99.50	0.00e+00	752.00
IUUC-Csa-023816	Chlorocebus sabaeus	99.76	0.00e+00	776.00
IUUC-Cho-024958	Choloepus hoffmanni	60.21	3.00e-63	234.00
IUUC-Cin-025721	Ciona intestinalis	50.80	2.00e-87	315.00
IUUC-Csv-026065	Ciona savignyi	51.76	7.00e-92	330.00
IUUC-Dre-027356	Danio rerio	69.52	1.00e-149	522.00
IUUC-Dno-029918	Dasypus novemcinctus	99.48	0.00e+00	744.00
IUUC-Dor-030634	Dipodomys ordii	100.00	0.00e+00	701.00
IUUC-Dse-031245	Dothistroma septosporum	24.67	7.00e-05	42.40
IUUC-Dme-031667	Drosophila melanogaster	62.21	2.00e-122	432.00
IUUC-Ete-032246	Echinops telfairi	73.11	1.00e-153	535.00
IUUC-Eca-034015	Equus caballus	75.14	6.00e-159	553.00
IUUC-Eeu-034902	Erinaceus europaeus	100.00	0.00e+00	701.00
IUUC-Fca-035903	Felis catus	99.51	0.00e+00	754.00
IUUC-Fal-037407	Ficedula albicollis	76.75	4.00e-152	530.00
IUUC-Gmo-039466	Gadus morhua	91.52	0.00e+00	745.00
IUUC-Ggr-040030	Gaeumannomyces graminis	25.93	4.00e-03	37.00
IUUC-Gga-040214	Gallus gallus	98.54	0.00e+00	761.00
IUUC-Gac-042214	Gasterosteus aculeatus	90.89	0.00e+00	747.00
IUUC-Gma-042794	Glycine max	23.90	2.00e-06	47.80
IUUC-Ggo-044988	Gorilla gorilla	74.86	2.00e-159	555.00
IUUC-Hsa-046092	Homo sapiens	74.58	5.00e-156	543.00
IUUC-Lch-049895	Latimeria chalumnae	81.85	3.00e-100	357.00
IUUC-Lpe-050806	Leersia perrieri	25.34	4.00e-06	47.00
IUUC-Loc-052845	Lepisosteus oculatus	96.35	0.00e+00	764.00
IUUC-Lma-053090	Leptosphaeria maculans	23.62	1.00e-04	41.60
IUUC-Laf-054538	Loxodonta africana	97.00	0.00e+00	649.00
IUUC-Mcc-055116	Macaca mulatta	70.10	4.00e-118	417.00
IUUC-Meu-056777	Macropus eugenii	94.40	0.00e+00	645.00
IUUC-Mpo-057376	Magnaporthe poae	21.47	2.00e-03	37.70
IUUC-Mtr-058142	Medicago truncatula	23.90	2.00e-06	47.80
IUUC-Mga-059716	Meleagris gallopavo	76.19	3.00e-151	527.00
IUUC-Mmr-060649	Microcebus murinus	74.58	5.00e-158	550.00
IUUC-Mdo-062535	Monodelphis domestica	75.14	5.00e-156	543.00
IUUC-Mmu-064036	Mus musculus	74.02	2.00e-156	545.00
IUUC-Mac-065338	Musa acuminata	23.70	2.00e-05	44.70
IUUC-Mpu-065719	Mustela putorius furo	100.00	0.00e+00	777.00
IUUC-Mlu-067219	Myotis lucifugus	98.28	0.00e+00	743.00
IUUC-Ncr-068691	Neurospora crassa	22.36	6.00e-05	42.70
IUUC-Nle-068983	Nomascus leucogenys	75.71	3.00e-159	553.00
IUUC-Opr-070467	Ochotona princeps	100.00	0.00e+00	701.00
IUUC-Ont-071566	Oreochromis niloticus	93.10	0.00e+00	756.00
IUUC-Oan-073368	Ornithorhynchus anatinus	98.93	0.00e+00	686.00
IUUC-Ocu-074854	Oryctolagus cuniculus	74.86	4.00e-160	556.00
IUUC-Ome-081687	Oryza meridionalis	24.64	1.00e-03	37.70
IUUC-Ola-086364	Oryzias latipes	93.12	0.00e+00	752.00
IUUC-Oga-088235	Otolemur garnettii	73.74	6.00e-155	539.00
IUUC-Oar-089547	Ovis aries	99.03	0.00e+00	764.00
IUUC-Ptr-091423	Pan troglodytes	75.14	7.00e-159	553.00
IUUC-Pan-092378	Papio anubis	99.73	0.00e+00	699.00
IUUC-Psi-093638	Pelodiscus sinensis	75.14	3.00e-153	534.00
IUUC-Pma-094384	Petromyzon marinus	65.36	1.00e-50	191.00
IUUC-Pno-095027	Phaeosphaeria nodorum	22.66	2.00e-04	40.80
IUUC-Pfo-096031	Poecilia formosa	90.93	0.00e+00	695.00
IUUC-Pab-097886	Pongo abelii	75.71	3.00e-159	553.00
IUUC-Pop-099430	Populus trichocarpa	25.43	6.00e-06	46.20
IUUC-Pca-101138	Procavia capensis	100.00	0.00e+00	701.00
IUUC-Ppe-101293	Prunus persica	28.57	5.00e-06	46.20
IUUC-Pva-103215	Pteropus vampyrus	75.14	1.00e-159	555.00
IUUC-Pte-104238	Pyrenophora teres	24.41	3.00e-04	40.00
IUUC-Rno-105968	Rattus norvegicus	74.30	1.00e-156	545.00
IUUC-Sha-107595	Sarcophilus harrisii	99.24	0.00e+00	734.00
IUUC-Ssl-108527	Sclerotinia sclerotiorum	26.14	3.00e-06	46.60
IUUC-Smo-109552	Selaginella moellendorffii	19.67	8.00e-05	42.40
IUUC-Sly-110873	Solanum lycopersicum	26.06	9.00e-06	45.80
IUUC-Stu-112586	Solanum tuberosum	20.00	8.00e-03	35.80
IUUC-Sar-113076	Sorex araneus	72.53	5.00e-102	363.00
IUUC-Sre-115143	Sporisorium reilianum	18.84	9.00e-03	35.40
IUUC-Ssc-115755	Sus scrofa	99.47	0.00e+00	692.00
IUUC-Tgu-117326	Taeniopygia guttata	76.47	2.00e-151	528.00
IUUC-Tru-117858	Takifugu rubripes	72.65	5.00e-157	546.00
IUUC-Tsy-119296	Tarsius syrichta	68.44	2.00e-139	488.00
IUUC-Tni-119822	Tetraodon nigroviridis	89.83	0.00e+00	632.00
IUUC-Tca-120935	Theobroma cacao	28.57	3.00e-06	47.40
IUUC-Tbe-127366	Tupaia belangeri	98.40	0.00e+00	676.00
IUUC-Ttr-128484	Tursiops truncatus	75.08	5.00e-148	516.00
IUUC-Vpa-130304	Vicugna pacos	72.34	4.00e-118	417.00
IUUC-Vvi-131560	Vitis vinifera	28.42	1.00e-05	45.40
IUUC-Xtr-132062	Xenopus tropicalis	97.87	0.00e+00	681.00
IUUC-Xma-134288	Xiphophorus maculatus	93.69	0.00e+00	767.00
IUUC-Yli-134374	Yarrowia lipolytica	20.53	3.00e-06	46.60
IUUC-Zma-135310	Zea mays	22.10	3.00e-04	40.40

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence