iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098989

UUCD1 version

UUC-PoT-00683

Ensembl Protein ID

POPTR_0007s10380.1

UniProt Accession

U5G875; U5G875_POPTR

Genbank Protein ID

ERP58474.1; ERP58475.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000343; CM000343

Gene Name

POPTRDRAFT_746796; POPTR_0007s10380g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0007s10380	POPTR_0007s10380.1	POPTR_0007s10380.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-52	173.6	350	388
UBD/Beta-Prp	2.20e-67	228.5	222	422

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH ++v+++af ++  +l+sGs D  i +W+lr+g+ +k
   Q: 350  GHREPVYSVAFsPNgEYLASGSLDRCINIWSLREGKIVK 388
           8***********777********************9987 PP

UBD/Beta-Prp

   S: 14   tcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
            +v++ +++  +at+s+d++i v +v +   ++++ gh++ev++vk++p+g++l+++s+D  +k+w++++ k+vh l++h+++++++++sp
   Q: 222  LDVDW-RNNVSFATSSTDNMIYVCKVGETRPIKTFAGHQGEVNCVKWDPTGSWLASCSDDISAKIWSMKQEKYVHDLREHSKEIYTIRWSP 311
           55666.455569******************************************************************************* PP
   S: 105  ........sg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvysl 186
                   ++  +l+s+s d+t+++wd+e g+ l   l+gh++ v +v+++p+g +l+sGslDr++++W+l+ gk+++t  g  ++ +  +
   Q: 312  tgpgtnnpNQpLVLASASFDSTVKLWDVEFGKLLC-SLNGHREPVYSVAFSPNGEYLASGSLDRCINIWSLREGKIVKTYAG--NGGIFEV 399
           887776654446899*******************9.********************************************88..9****** PP
   S: 187  sfdsngkelvsgsldgtvklwdl 209
            ++++g  ++++  ++tv + d+
   Q: 400  CWNKEGDKIAACFANNTVCVLDF 422
           *****************998886 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MERRRRRKTK TKTKTKTKIW SSMLSQCRDG EATVKSHFVF LFPLEFGPEP MDISTASTSQ 60
TCEIPSSDVM ILEGHTSEVC ACAWSPTGSL LASGSGDSTA RIWTIAEGTS RSVAQNGPLN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTCGCTTCA TAACATAAAC GGTTTTTCAG TTCCAGAGCT ACTCCGTCTC CCTCATTTCC 60
ACCTGCGCTG CCTCTCAACC TTCTCTCTAG CCCATATGAT TTATATGAGC TATAATCACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003714--F:transcription corepressor activity
GO:0016575--P:histone deacetylation
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

KEGG

pop:POPTR_0007s10380g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000916	Aegilops tauschii	76.06	1.00e-65	241.00
IUUC-Aml-001450	Ailuropoda melanoleuca	57.93	1.00e-134	473.00
IUUC-Atr-002514	Amborella trichopoda	79.68	0.00e+00	627.00
IUUC-Apl-003708	Anas platyrhynchos	61.54	2.00e-127	448.00
IUUC-Aca-004611	Anolis carolinensis	61.26	4.00e-127	447.00
IUUC-Aly-005622	Arabidopsis lyrata	81.48	2.00e-179	621.00
IUUC-Ath-007137	Arabidopsis thaliana	80.95	7.00e-179	619.00
IUUC-Ame-011601	Astyanax mexicanus	61.58	8.00e-129	453.00
IUUC-Bta-013202	Bos taurus	58.15	5.00e-136	477.00
IUUC-Bdi-014315	Brachypodium distachyon	76.72	3.00e-169	587.00
IUUC-Bol-016277	Brassica oleracea	77.93	4.00e-178	617.00
IUUC-Bra-016944	Brassica rapa	78.19	1.00e-178	619.00
IUUC-Cja-018832	Callithrix jacchus	61.54	1.00e-127	449.00
IUUC-Cfa-020929	Canis familiaris	57.39	1.00e-134	473.00
IUUC-Cpo-021682	Cavia porcellus	58.15	1.00e-135	475.00
IUUC-Cre-022979	Chlamydomonas reinhardtii	60.11	7.00e-127	446.00
IUUC-Csa-024075	Chlorocebus sabaeus	61.54	1.00e-127	449.00
IUUC-Cin-025704	Ciona intestinalis	57.85	4.00e-131	461.00
IUUC-Csv-026257	Ciona savignyi	58.82	1.00e-130	459.00
IUUC-Cne-026946	Cryptococcus neoformans	31.38	1.00e-26	114.00
IUUC-Cme-027258	Cyanidioschyzon merolae	42.92	7.00e-92	330.00
IUUC-Dre-027906	Danio rerio	61.31	1.00e-128	452.00
IUUC-Dno-029196	Dasypus novemcinctus	61.54	1.00e-127	449.00
IUUC-Dor-030732	Dipodomys ordii	61.17	1.00e-123	436.00
IUUC-Dme-031939	Drosophila melanogaster	58.09	3.00e-121	428.00
IUUC-Ete-033150	Echinops telfairi	60.73	3.00e-112	398.00
IUUC-Eca-033897	Equus caballus	57.64	4.00e-135	474.00
IUUC-Eeu-034952	Erinaceus europaeus	53.89	3.00e-105	375.00
IUUC-Fca-036462	Felis catus	57.64	4.00e-135	474.00
IUUC-Fal-037388	Ficedula albicollis	57.39	3.00e-135	474.00
IUUC-Gmo-038870	Gadus morhua	61.26	2.00e-133	469.00
IUUC-Gga-040671	Gallus gallus	57.39	3.00e-135	474.00
IUUC-Gac-041844	Gasterosteus aculeatus	62.09	9.00e-137	479.00
IUUC-Gma-043369	Glycine max	89.15	0.00e+00	712.00
IUUC-Ggo-044882	Gorilla gorilla	61.54	1.00e-127	449.00
IUUC-Hsa-046488	Homo sapiens	61.54	1.00e-127	449.00
IUUC-Itr-047958	Ictidomys tridecemlineatus	61.54	1.00e-126	445.00
IUUC-Lch-050672	Latimeria chalumnae	61.81	4.00e-128	451.00
IUUC-Lpe-051084	Leersia perrieri	77.51	5.00e-172	597.00
IUUC-Loc-052030	Lepisosteus oculatus	62.09	6.00e-137	480.00
IUUC-Laf-054071	Loxodonta africana	57.14	3.00e-134	471.00
IUUC-Mcc-055203	Macaca mulatta	61.54	1.00e-127	449.00
IUUC-Meu-056563	Macropus eugenii	67.51	7.00e-90	323.00
IUUC-Mtr-058624	Medicago truncatula	82.01	0.00e+00	643.00
IUUC-Mga-059895	Meleagris gallopavo	57.39	3.00e-135	474.00
IUUC-Mvi-060557	Microbotryum violaceum	36.10	4.00e-68	252.00
IUUC-Mmr-061286	Microcebus murinus	57.39	6.00e-135	473.00
IUUC-Mdo-062078	Monodelphis domestica	61.81	3.00e-128	451.00
IUUC-Mmu-063447	Mus musculus	57.89	2.00e-135	475.00
IUUC-Mac-065508	Musa acuminata	75.36	2.00e-119	421.00
IUUC-Mpu-066741	Mustela putorius furo	61.54	1.00e-127	449.00
IUUC-Mlu-068152	Myotis lucifugus	61.54	9.00e-128	449.00
IUUC-Nle-069229	Nomascus leucogenys	61.54	1.00e-127	449.00
IUUC-Opr-070277	Ochotona princeps	50.84	7.00e-94	337.00
IUUC-Ont-071569	Oreochromis niloticus	62.36	3.00e-137	481.00
IUUC-Oan-073562	Ornithorhynchus anatinus	57.89	9.00e-136	476.00
IUUC-Ocu-074280	Oryctolagus cuniculus	61.54	1.00e-127	449.00
IUUC-Oba-075618	Oryza barthii	74.07	4.00e-161	560.00
IUUC-Obr-076718	Oryza brachyantha	77.51	5.00e-172	597.00
IUUC-Ogl-077302	Oryza glaberrima	77.25	1.00e-172	599.00
IUUC-Ogu-078718	Oryza glumaepatula	77.25	1.00e-172	599.00
IUUC-Oin-079515	Oryza indica	68.56	7.00e-100	357.00
IUUC-Olo-080427	Oryza longistaminata	77.81	2.00e-161	561.00
IUUC-Ome-081696	Oryza meridionalis	76.19	1.00e-167	582.00
IUUC-Oni-082137	Oryza nivara	77.25	1.00e-172	599.00
IUUC-Opu-083505	Oryza punctata	74.07	4.00e-161	560.00
IUUC-Oru-085276	Oryza rufipogon	77.25	1.00e-172	598.00
IUUC-Osa-085791	Oryza sativa	77.25	1.00e-172	599.00
IUUC-Ola-087365	Oryzias latipes	61.54	2.00e-135	475.00
IUUC-Olu-087589	Ostreococcus lucimarinus	62.33	6.00e-141	493.00
IUUC-Oga-088357	Otolemur garnettii	59.62	1.00e-118	419.00
IUUC-Oar-089506	Ovis aries	57.89	1.00e-135	475.00
IUUC-Ptr-091532	Pan troglodytes	61.54	1.00e-127	449.00
IUUC-Pan-091927	Papio anubis	61.54	1.00e-127	449.00
IUUC-Psi-093358	Pelodiscus sinensis	59.79	3.00e-134	471.00
IUUC-Pma-094105	Petromyzon marinus	57.46	2.00e-37	148.00
IUUC-Ppa-095868	Physcomitrella patens	73.21	2.00e-160	558.00
IUUC-Pfo-096158	Poecilia formosa	61.54	2.00e-136	478.00
IUUC-Pab-098705	Pongo abelii	61.54	1.00e-127	449.00
IUUC-Pca-100256	Procavia capensis	60.83	3.00e-124	438.00
IUUC-Ppe-101572	Prunus persica	81.22	4.00e-167	580.00
IUUC-Pva-102616	Pteropus vampyrus	61.17	3.00e-124	438.00
IUUC-Rno-105857	Rattus norvegicus	57.89	2.00e-135	475.00
IUUC-Sha-107326	Sarcophilus harrisii	57.64	3.00e-135	474.00
IUUC-Smo-109301	Selaginella moellendorffii	74.03	1.00e-161	562.00
IUUC-Sit-110710	Setaria italica	77.78	8.00e-177	612.00
IUUC-Sly-111336	Solanum lycopersicum	79.05	5.00e-176	610.00
IUUC-Stu-112786	Solanum tuberosum	68.72	3.00e-152	531.00
IUUC-Sar-112971	Sorex araneus	53.19	2.00e-113	402.00
IUUC-Sbi-114420	Sorghum bicolor	77.78	1.00e-178	619.00
IUUC-Sre-115175	Sporisorium reilianum	40.32	2.00e-52	200.00
IUUC-Ssc-115646	Sus scrofa	57.64	2.00e-135	475.00
IUUC-Tgu-116898	Taeniopygia guttata	57.39	3.00e-135	474.00
IUUC-Tru-118254	Takifugu rubripes	62.09	2.00e-136	478.00
IUUC-Tsy-118853	Tarsius syrichta	46.87	1.00e-96	347.00
IUUC-Tni-119986	Tetraodon nigroviridis	62.36	6.00e-136	476.00
IUUC-Tca-121739	Theobroma cacao	83.99	0.00e+00	674.00
IUUC-Tae-125368	Triticum aestivum	77.25	5.00e-170	590.00
IUUC-Tur-126856	Triticum urartu	77.00	1.00e-86	312.00
IUUC-Tme-127126	Tuber melanosporum	36.87	3.00e-50	191.00
IUUC-Tbe-127767	Tupaia belangeri	63.01	1.00e-112	398.00
IUUC-Ttr-128826	Tursiops truncatus	57.54	9.00e-119	419.00
IUUC-Uma-129469	Ustilago maydis	40.71	5.00e-53	202.00
IUUC-Vpa-130768	Vicugna pacos	60.83	3.00e-124	437.00
IUUC-Vvi-131193	Vitis vinifera	90.21	0.00e+00	703.00
IUUC-Xtr-132842	Xenopus tropicalis	58.95	6.00e-120	424.00
IUUC-Xma-134020	Xiphophorus maculatus	61.54	3.00e-136	478.00
IUUC-Yli-134648	Yarrowia lipolytica	28.97	8.00e-40	157.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence