iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Csa-023989

Ensembl Protein ID

ENSCSAP00000006619.1

UniProt Accession

A0A0D9RDD0; A0A0D9RDD0_CHLSB

Genbank Protein ID

ENSCSAP00000006619

Protein Name

Ribosome biogenesis protein WDR12; WD repeat-containing protein 12

Genbank Nucleotide ID

AQIB01007101

Gene Name

WDR12

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCSAG00000010442.1	ENSCSAT00000008473.1	ENSCSAP00000006619.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.70e-43	143.3	341	376
UBD/Beta-Prp	8.60e-47	159.7	246	412

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtgv 34
           Ht++vt++++  +    l+sGs D+ +k+WD+r+++
   Q: 341  HTGWVTSVKWspTHeQQLISGSLDNIVKLWDTRSCK 376
           **********9533678**************99876 PP

UBD/Beta-Prp

   S: 83   tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl..ktg 169
           t+++++tl+gh + v s+ +s   + + s+s+d tirvwd+e+g+  + tl+g++ v nc++++p ++ l+sGs+Dr +rlWd   k g
   Q: 246  TRTPIVTLSGHMEAVSSVLWSD-AEEICSASWDHTIRVWDVESGSLKS-TLTGNK-VFNCISYSPLCKRLASGSTDRHIRLWDPrtKDG 331
           67899****************9.99**********************9.***987.99**************************54456 PP
   S: 170  kllrtl.tgghtdsvyslsfdsng.kelvsgsldgtvklwdlq.tgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
           +l+    t+ ht+ v+s++++++  ++l+sgsld+ vklwd +  +  ++ l +h+d v+sv+ + ++ +l+sg++D+ ++ +
   Q: 332  SLVSLSlTS-HTGWVTSVKWSPTHeQQLISGSLDNIVKLWDTRsCKAPLYDLAAHEDKVLSVDWT-DTGLLLSGGADNKLYSY 412
           666644366.************9889*****************54566****************9.999********998765 PP

Organism

Chlorocebus sabaeus

Functional Description
(View)

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MAQLQTRFYT DNKKYAVDDV PFSIPAASEI ADLSNIINKL LKDRNEFHKH VEFDFLIKGQ 60
FLRMPLIKHM ELENISSEEV VEIEYVEKYT APQPEQCMFH DDWISSIKGA EEWILTGSYD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTCAGC TCCAAACACG CTTCTACACT GATAACAAGA AGTAAGTAAG CGTTCCACCC 60
TTCGCTCCCT TCCCCAGTTC CTTTCCGACC ACCGTTTGGT ATGACCTTGC GGATCCCTGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0008283--P:cell proliferation
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0007219--P:Notch signaling pathway

KEGG

csab:103217673

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	33.02	5.00e-56	211.00
IUUC-Aml-001997	Ailuropoda melanoleuca	96.59	0.00e+00	747.00
IUUC-Atr-002544	Amborella trichopoda	33.33	2.00e-54	206.00
IUUC-Apl-003981	Anas platyrhynchos	86.70	0.00e+00	644.00
IUUC-Aca-004370	Anolis carolinensis	84.47	0.00e+00	699.00
IUUC-Aly-006455	Arabidopsis lyrata	34.73	3.00e-57	215.00
IUUC-Ath-006669	Arabidopsis thaliana	34.15	2.00e-53	203.00
IUUC-Ago-007864	Ashbya gossypii	29.93	5.00e-36	145.00
IUUC-Acl-008177	Aspergillus clavatus	29.23	6.00e-36	145.00
IUUC-Afl-008617	Aspergillus flavus	29.49	9.00e-35	141.00
IUUC-Afu-008752	Aspergillus fumigatus	28.29	4.00e-32	132.00
IUUC-Ani-009136	Aspergillus nidulans	30.00	5.00e-35	142.00
IUUC-Ang-009701	Aspergillus niger	27.95	8.00e-33	134.00
IUUC-Aor-009884	Aspergillus oryzae	29.49	8.00e-35	141.00
IUUC-Ate-010472	Aspergillus terreus	29.88	4.00e-21	95.10
IUUC-Ame-011432	Astyanax mexicanus	75.65	0.00e+00	646.00
IUUC-Bgr-012218	Blumeria graminis	28.61	7.00e-32	131.00
IUUC-Bta-012829	Bos taurus	95.74	0.00e+00	771.00
IUUC-Bci-013953	Botrytis cinerea	30.08	8.00e-34	137.00
IUUC-Bdi-014351	Brachypodium distachyon	35.55	8.00e-55	207.00
IUUC-Bol-016514	Brassica oleracea	33.81	1.00e-52	200.00
IUUC-Bra-017876	Brassica rapa	33.99	4.00e-55	208.00
IUUC-Cel-018569	Caenorhabditis elegans	31.62	2.00e-46	179.00
IUUC-Cja-019468	Callithrix jacchus	97.87	0.00e+00	766.00
IUUC-Cfa-020471	Canis familiaris	94.80	0.00e+00	743.00
IUUC-Cpo-022260	Cavia porcellus	95.51	0.00e+00	754.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	30.96	2.00e-38	152.00
IUUC-Cho-024426	Choloepus hoffmanni	92.06	3.00e-158	551.00
IUUC-Cin-025789	Ciona intestinalis	43.65	2.00e-97	348.00
IUUC-Cne-027063	Cryptococcus neoformans	24.34	1.00e-20	94.70
IUUC-Dre-027907	Danio rerio	76.36	0.00e+00	659.00
IUUC-Dno-029225	Dasypus novemcinctus	94.33	0.00e+00	763.00
IUUC-Dor-031082	Dipodomys ordii	78.01	6.00e-168	583.00
IUUC-Dse-031308	Dothistroma septosporum	27.79	2.00e-34	140.00
IUUC-Dme-032189	Drosophila melanogaster	41.50	6.00e-92	330.00
IUUC-Ete-032247	Echinops telfairi	87.94	0.00e+00	705.00
IUUC-Eca-034285	Equus caballus	95.74	0.00e+00	771.00
IUUC-Eeu-035322	Erinaceus europaeus	84.92	0.00e+00	643.00
IUUC-Fca-036114	Felis catus	95.27	0.00e+00	768.00
IUUC-Fal-036891	Ficedula albicollis	85.88	7.00e-173	599.00
IUUC-Fox-037965	Fusarium oxysporum	25.59	2.00e-33	137.00
IUUC-Fso-038244	Fusarium solani	26.64	4.00e-33	135.00
IUUC-Gmo-039040	Gadus morhua	75.41	0.00e+00	665.00
IUUC-Gga-040610	Gallus gallus	83.69	0.00e+00	709.00
IUUC-Gac-042117	Gasterosteus aculeatus	74.23	0.00e+00	642.00
IUUC-Gma-043146	Glycine max	37.17	2.00e-64	239.00
IUUC-Ggo-045179	Gorilla gorilla	98.35	0.00e+00	766.00
IUUC-Hsa-046114	Homo sapiens	99.05	0.00e+00	772.00
IUUC-Hvu-047331	Hordeum vulgare	33.59	1.00e-51	196.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	95.74	0.00e+00	770.00
IUUC-Kpa-049304	Komagataella pastoris	28.67	1.00e-39	157.00
IUUC-Lch-050655	Latimeria chalumnae	76.72	2.00e-142	498.00
IUUC-Lpe-051675	Leersia perrieri	34.84	3.00e-57	216.00
IUUC-Loc-052868	Lepisosteus oculatus	79.91	0.00e+00	662.00
IUUC-Lma-053258	Leptosphaeria maculans	26.78	2.00e-30	128.00
IUUC-Laf-053993	Loxodonta africana	94.33	0.00e+00	768.00
IUUC-Mcc-055128	Macaca mulatta	79.91	3.00e-174	603.00
IUUC-Meu-056501	Macropus eugenii	78.82	4.00e-161	560.00
IUUC-Mor-057114	Magnaporthe oryzae	26.71	2.00e-25	110.00
IUUC-Mtr-058367	Medicago truncatula	36.21	2.00e-58	219.00
IUUC-Mla-059107	Melampsora laricipopulina	27.43	2.00e-28	120.00
IUUC-Mga-059745	Meleagris gallopavo	81.65	0.00e+00	682.00
IUUC-Mvi-060362	Microbotryum violaceum	29.79	2.00e-34	140.00
IUUC-Mdo-062257	Monodelphis domestica	85.68	0.00e+00	716.00
IUUC-Mmu-063546	Mus musculus	93.62	0.00e+00	761.00
IUUC-Mac-065540	Musa acuminata	34.44	8.00e-54	204.00
IUUC-Mpu-066284	Mustela putorius furo	96.69	0.00e+00	777.00
IUUC-Mlu-067241	Myotis lucifugus	95.74	0.00e+00	773.00
IUUC-Nfi-068260	Neosartorya fischeri	28.05	4.00e-34	139.00
IUUC-Ncr-068719	Neurospora crassa	26.58	2.00e-26	113.00
IUUC-Nle-068981	Nomascus leucogenys	98.82	0.00e+00	752.00
IUUC-Opr-071218	Ochotona princeps	87.19	0.00e+00	669.00
IUUC-Ont-071646	Oreochromis niloticus	76.87	0.00e+00	663.00
IUUC-Oan-073453	Ornithorhynchus anatinus	88.65	0.00e+00	751.00
IUUC-Ocu-074008	Oryctolagus cuniculus	96.45	0.00e+00	776.00
IUUC-Oba-075712	Oryza barthii	30.53	1.00e-40	160.00
IUUC-Obr-076721	Oryza brachyantha	34.29	5.00e-57	214.00
IUUC-Ogl-077229	Oryza glaberrima	34.37	3.00e-56	212.00
IUUC-Ogu-078977	Oryza glumaepatula	30.53	7.00e-41	161.00
IUUC-Oin-079683	Oryza indica	34.37	2.00e-56	213.00
IUUC-Olo-080291	Oryza longistaminata	30.30	1.00e-27	116.00
IUUC-Ome-081834	Oryza meridionalis	34.61	2.00e-57	216.00
IUUC-Oni-082507	Oryza nivara	33.25	2.00e-52	199.00
IUUC-Opu-083396	Oryza punctata	34.61	2.00e-57	216.00
IUUC-Oru-085220	Oryza rufipogon	33.81	4.00e-52	198.00
IUUC-Osa-085767	Oryza sativa	34.37	2.00e-56	213.00
IUUC-Ola-087420	Oryzias latipes	77.07	0.00e+00	662.00
IUUC-Olu-087740	Ostreococcus lucimarinus	27.88	4.00e-35	142.00
IUUC-Oga-088264	Otolemur garnettii	95.98	0.00e+00	757.00
IUUC-Oar-089335	Ovis aries	95.27	0.00e+00	767.00
IUUC-Ptr-091320	Pan troglodytes	99.05	0.00e+00	772.00
IUUC-Pan-092833	Papio anubis	99.05	0.00e+00	773.00
IUUC-Psi-093504	Pelodiscus sinensis	86.76	0.00e+00	727.00
IUUC-Pma-094189	Petromyzon marinus	68.40	8.00e-169	586.00
IUUC-Pno-094929	Phaeosphaeria nodorum	26.67	4.00e-32	132.00
IUUC-Ppa-095429	Physcomitrella patens	35.61	4.00e-64	238.00
IUUC-Pfo-096337	Poecilia formosa	74.70	0.00e+00	664.00
IUUC-Pab-097571	Pongo abelii	98.58	0.00e+00	771.00
IUUC-Pop-099977	Populus trichocarpa	35.82	2.00e-62	232.00
IUUC-Pca-100394	Procavia capensis	88.51	0.00e+00	666.00
IUUC-Ppe-101848	Prunus persica	35.58	1.00e-58	220.00
IUUC-Pva-102921	Pteropus vampyrus	94.33	3.00e-114	405.00
IUUC-Pgr-103637	Puccinia graminis	28.60	2.00e-33	137.00
IUUC-Ptt-103781	Puccinia triticina	28.60	2.00e-33	136.00
IUUC-Pte-104135	Pyrenophora teres	25.83	4.00e-31	130.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	25.71	4.00e-30	125.00
IUUC-Rno-105114	Rattus norvegicus	93.14	0.00e+00	758.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.52	2.00e-37	150.00
IUUC-Sha-107122	Sarcophilus harrisii	86.13	0.00e+00	687.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	31.78	5.00e-47	181.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.82	4.00e-38	152.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	29.25	1.00e-34	140.00
IUUC-Smo-108720	Selaginella moellendorffii	33.10	2.00e-56	212.00
IUUC-Sit-110311	Setaria italica	35.55	3.00e-55	209.00
IUUC-Sly-111023	Solanum lycopersicum	32.52	3.00e-52	199.00
IUUC-Stu-112778	Solanum tuberosum	35.56	7.00e-59	221.00
IUUC-Sar-113596	Sorex araneus	78.49	3.00e-174	604.00
IUUC-Sbi-114193	Sorghum bicolor	34.96	2.00e-56	213.00
IUUC-Sre-115002	Sporisorium reilianum	25.00	2.00e-10	60.50
IUUC-Ssc-116066	Sus scrofa	95.98	0.00e+00	770.00
IUUC-Tgu-117048	Taeniopygia guttata	84.57	0.00e+00	636.00
IUUC-Tsy-119573	Tarsius syrichta	62.92	3.00e-132	464.00
IUUC-Tni-119820	Tetraodon nigroviridis	75.53	0.00e+00	662.00
IUUC-Tca-121605	Theobroma cacao	36.06	2.00e-59	223.00
IUUC-Tre-121947	Trichoderma reesei	26.28	7.00e-33	134.00
IUUC-Tvi-122481	Trichoderma virens	26.50	2.00e-34	139.00
IUUC-Tae-125861	Triticum aestivum	33.25	4.00e-56	212.00
IUUC-Tur-126586	Triticum urartu	33.85	7.00e-54	204.00
IUUC-Tme-126900	Tuber melanosporum	32.15	7.00e-48	184.00
IUUC-Tbe-127736	Tupaia belangeri	73.12	8.00e-153	533.00
IUUC-Ttr-129041	Tursiops truncatus	83.69	0.00e+00	657.00
IUUC-Vpa-130260	Vicugna pacos	96.45	0.00e+00	776.00
IUUC-Vvi-131009	Vitis vinifera	35.48	3.00e-59	222.00
IUUC-Xtr-132083	Xenopus tropicalis	81.32	0.00e+00	672.00
IUUC-Xma-133094	Xiphophorus maculatus	74.47	0.00e+00	660.00
IUUC-Yli-134531	Yarrowia lipolytica	23.25	9.00e-18	84.70
IUUC-Zma-135509	Zea mays	33.57	7.00e-57	214.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence