iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006970

UUCD1 version

UUC-ArT-00713

Ensembl Protein ID

AT3G27640.1

UniProt Accession

Q94C55; Q94C55_ARATH

Genbank Protein ID

AAK59671.1; AAL34177.1; AEE77347.1

Protein Name

Putative uncharacterized protein At3g27640; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

AY035167; AY063003; CP002686

Gene Name

At3g27640

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G27640	AT3G27640.1	AT3G27640.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-25	89.2	127	163
UBD/Beta-Prp	1.10e-41	143.8	77	320

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H + ++++++   d  l+++s+D tikvWD+ +++++
   Q: 127  HYNAIFDISWikGDSCLLTASGDQTIKVWDVEENKCT 163
           7778*******866789**************999886 PP

UBD/Beta-Prp

   S: 15   cvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheae..............vtavkfspdgkilvtgseDrtikvwdlstgkcvhtl 90
             k s++++l+a++ +dg + +++ +++k+                 +              + ++++++ ++ l+t+s D+tikvwd++ +kc+ +l
   Q: 77   FCKTSRNSQLFAVSDEDGHVSLFNSSSKKFassathqeN--------TekarfrdwiahynaIFDISWIKGDSCLLTASGDQTIKVWDVEENKCTGVL 166
           4456899999***************99999444444440........34555555655555599999999999************************* PP
   S: 91   kghedsvlslsfsp.sgdklvsGshdrtirvwdletgqclee........................tlsghdgvvncvvvhpdg.nllvsGslDrtvr 162
            gh+ +v s+ ++p ++d lvsGs+d    +wdl+ ++ +++                          +  ++++++v + +d+  +  +G+ D++++
   Q: 167  IGHTGTVKSMCSHPtNSDLLVSGSRDGCFALWDLRCKSSSHKeefcinstgmvkgahlsplskrirRRKAASSSITSVLYVKDEiTIATAGAPDSALK 264
           *************95559****************9999999999999************9999988667777788888888888799999999***** PP
   S: 163  lWdl...........ktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           +Wd+           ++ +   t ++   + + sls ds+g++l +  +d+++ l++
   Q: 265  FWDIrklkapfaqasPQSDPTNTKEK-RSHGIVSLSQDSSGTYLTASCKDNRIYLYN 320
           ***98888888876655555555555.889999999999999999999999999997 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MRDHTAQKIQ YPAGFRDSPM ESSRSRSVFV NIGLRELNGF RVRKRPFFAD SELICREIAG 60
VAVEHDGIWT PPLAVSFCKT SRNSQLFAVS DEDGHVSLFN SSSKKFASSA THQENTEKAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCAGCATAA GAGGTCAAAC AAAAACATTT TCGATTTTGG GGAAAAATTA ATTTTCCCGC 60
GTCAAATGAG AGACCACACC GCCCAAAAAA TCCAGTATCC CGCCGGATTC AGGTAATAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR002469--Peptidase_S9B_N
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002111	Ailuropoda melanoleuca	34.51	5.00e-61	228.00
IUUC-Atr-003097	Amborella trichopoda	49.32	5.00e-118	417.00
IUUC-Apl-004088	Anas platyrhynchos	36.07	1.00e-64	240.00
IUUC-Aca-004732	Anolis carolinensis	34.65	3.00e-61	229.00
IUUC-Aly-005686	Arabidopsis lyrata	91.71	0.00e+00	925.00
IUUC-Acl-008219	Aspergillus clavatus	25.61	7.00e-22	98.60
IUUC-Afl-008558	Aspergillus flavus	36.84	8.00e-16	77.40
IUUC-Afu-008784	Aspergillus fumigatus	25.45	9.00e-21	94.70
IUUC-Ani-009304	Aspergillus nidulans	24.18	6.00e-16	79.00
IUUC-Ang-009842	Aspergillus niger	24.44	9.00e-19	88.20
IUUC-Aor-009883	Aspergillus oryzae	24.78	5.00e-23	102.00
IUUC-Ate-010454	Aspergillus terreus	26.83	4.00e-17	82.00
IUUC-Ame-010949	Astyanax mexicanus	32.90	1.00e-57	216.00
IUUC-Bta-012333	Bos taurus	35.05	1.00e-60	227.00
IUUC-Bci-013733	Botrytis cinerea	24.17	7.00e-19	88.60
IUUC-Bdi-014494	Brachypodium distachyon	47.89	9.00e-113	399.00
IUUC-Bol-015301	Brassica oleracea	83.78	0.00e+00	828.00
IUUC-Bra-017384	Brassica rapa	87.26	0.00e+00	824.00
IUUC-Cel-018498	Caenorhabditis elegans	26.22	8.00e-34	138.00
IUUC-Cja-019534	Callithrix jacchus	34.50	1.00e-58	220.00
IUUC-Cfa-020847	Canis familiaris	34.51	1.00e-60	227.00
IUUC-Cpo-021695	Cavia porcellus	35.05	8.00e-62	231.00
IUUC-Cre-022762	Chlamydomonas reinhardtii	30.46	2.00e-43	171.00
IUUC-Csa-023748	Chlorocebus sabaeus	34.78	3.00e-61	229.00
IUUC-Cho-024445	Choloepus hoffmanni	31.41	8.00e-35	141.00
IUUC-Dre-027536	Danio rerio	34.66	1.00e-61	230.00
IUUC-Dno-030035	Dasypus novemcinctus	33.97	1.00e-60	227.00
IUUC-Dse-031354	Dothistroma septosporum	26.57	2.00e-27	117.00
IUUC-Dme-031691	Drosophila melanogaster	31.07	5.00e-47	182.00
IUUC-Ete-032814	Echinops telfairi	34.54	1.00e-34	140.00
IUUC-Eca-033332	Equus caballus	34.24	2.00e-60	226.00
IUUC-Fca-035571	Felis catus	34.51	4.00e-61	228.00
IUUC-Fal-037421	Ficedula albicollis	36.13	2.00e-62	233.00
IUUC-Fso-038192	Fusarium solani	24.13	2.00e-18	87.00
IUUC-Gmo-039365	Gadus morhua	33.95	3.00e-59	222.00
IUUC-Ggr-039904	Gaeumannomyces graminis	24.42	2.00e-16	80.90
IUUC-Gga-041153	Gallus gallus	35.77	1.00e-64	240.00
IUUC-Gac-041984	Gasterosteus aculeatus	33.74	5.00e-58	218.00
IUUC-Gma-042679	Glycine max	52.22	2.00e-131	462.00
IUUC-Ggo-044419	Gorilla gorilla	34.42	9.00e-60	224.00
IUUC-Hsa-045862	Homo sapiens	34.78	2.00e-61	229.00
IUUC-Hvu-047728	Hordeum vulgare	49.69	1.00e-121	429.00
IUUC-Itr-048786	Ictidomys tridecemlineatus	34.24	6.00e-61	228.00
IUUC-Lch-050616	Latimeria chalumnae	36.63	8.00e-61	228.00
IUUC-Lpe-051222	Leersia perrieri	46.32	4.00e-108	384.00
IUUC-Loc-052564	Lepisosteus oculatus	35.26	7.00e-58	218.00
IUUC-Lma-053098	Leptosphaeria maculans	25.34	2.00e-26	113.00
IUUC-Laf-053892	Loxodonta africana	35.33	3.00e-60	226.00
IUUC-Mcc-055854	Macaca mulatta	34.78	2.00e-61	229.00
IUUC-Mor-057144	Magnaporthe oryzae	25.45	2.00e-17	83.60
IUUC-Mtr-058510	Medicago truncatula	49.13	3.00e-115	407.00
IUUC-Mla-058823	Melampsora laricipopulina	25.13	6.00e-21	95.10
IUUC-Mga-060128	Meleagris gallopavo	36.61	2.00e-63	236.00
IUUC-Mvi-060475	Microbotryum violaceum	31.94	7.00e-46	178.00
IUUC-Mmr-061331	Microcebus murinus	35.26	8.00e-61	228.00
IUUC-Mdo-063020	Monodelphis domestica	37.19	2.00e-64	240.00
IUUC-Mmu-063713	Mus musculus	35.52	9.00e-63	234.00
IUUC-Mac-064653	Musa acuminata	51.72	4.00e-133	467.00
IUUC-Mpu-066490	Mustela putorius furo	34.51	1.00e-60	227.00
IUUC-Mlu-067900	Myotis lucifugus	33.97	7.00e-60	224.00
IUUC-Nfi-068433	Neosartorya fischeri	25.67	2.00e-21	97.10
IUUC-Ncr-068776	Neurospora crassa	26.01	7.00e-22	98.60
IUUC-Nle-069675	Nomascus leucogenys	34.07	1.00e-56	214.00
IUUC-Ont-071441	Oreochromis niloticus	34.08	4.00e-59	222.00
IUUC-Oan-072757	Ornithorhynchus anatinus	36.39	3.00e-62	232.00
IUUC-Ocu-074670	Oryctolagus cuniculus	35.05	2.00e-61	229.00
IUUC-Oba-075844	Oryza barthii	45.88	2.00e-110	392.00
IUUC-Obr-076625	Oryza brachyantha	47.28	4.00e-114	404.00
IUUC-Ogl-077771	Oryza glaberrima	45.88	2.00e-110	392.00
IUUC-Ogu-078475	Oryza glumaepatula	42.86	3.00e-94	338.00
IUUC-Oin-079958	Oryza indica	45.88	2.00e-110	392.00
IUUC-Olo-080311	Oryza longistaminata	47.85	7.00e-99	353.00
IUUC-Ome-081985	Oryza meridionalis	45.67	1.00e-109	389.00
IUUC-Oni-082921	Oryza nivara	45.88	2.00e-110	392.00
IUUC-Opu-083174	Oryza punctata	45.93	9.00e-104	370.00
IUUC-Oru-084338	Oryza rufipogon	45.88	3.00e-110	391.00
IUUC-Osa-085609	Oryza sativa	42.52	2.00e-39	154.00
IUUC-Olu-087907	Ostreococcus lucimarinus	25.00	3.00e-25	108.00
IUUC-Oga-088358	Otolemur garnettii	35.05	1.00e-61	230.00
IUUC-Oar-089994	Ovis aries	34.24	5.00e-60	224.00
IUUC-Ptr-091338	Pan troglodytes	34.78	2.00e-61	229.00
IUUC-Pan-091759	Papio anubis	34.69	7.00e-60	224.00
IUUC-Psi-093211	Pelodiscus sinensis	36.91	7.00e-63	234.00
IUUC-Pma-094588	Petromyzon marinus	29.81	4.00e-28	117.00
IUUC-Pno-094964	Phaeosphaeria nodorum	26.94	5.00e-26	112.00
IUUC-Ppa-095159	Physcomitrella patens	42.92	1.00e-99	356.00
IUUC-Pfo-096592	Poecilia formosa	31.42	7.00e-49	187.00
IUUC-Pab-098597	Pongo abelii	26.97	3.00e-30	125.00
IUUC-Pop-099255	Populus trichocarpa	56.89	5.00e-150	523.00
IUUC-Pca-100593	Procavia capensis	30.09	1.00e-41	163.00
IUUC-Ppe-101333	Prunus persica	55.92	5.00e-154	536.00
IUUC-Pva-102283	Pteropus vampyrus	35.78	4.00e-54	205.00
IUUC-Pgr-103383	Puccinia graminis	29.25	2.00e-19	90.10
IUUC-Ptt-103974	Puccinia triticina	31.10	4.00e-19	88.60
IUUC-Pte-104329	Pyrenophora teres	23.69	5.00e-22	98.60
IUUC-Pyt-104424	Pyrenophora triticirepentis	26.60	2.00e-21	97.10
IUUC-Rno-105720	Rattus norvegicus	35.52	4.00e-63	235.00
IUUC-Sha-106891	Sarcophilus harrisii	36.49	1.00e-59	223.00
IUUC-Sja-107723	Schizosaccharomyces japonicus	29.17	2.00e-30	125.00
IUUC-Spo-108060	Schizosaccharomyces pombe	31.39	1.00e-32	133.00
IUUC-Ssl-108481	Sclerotinia sclerotiorum	27.56	6.00e-15	75.50
IUUC-Sit-109862	Setaria italica	48.80	2.00e-118	418.00
IUUC-Sly-111468	Solanum lycopersicum	51.73	8.00e-147	513.00
IUUC-Stu-112346	Solanum tuberosum	50.94	8.00e-147	513.00
IUUC-Sar-113734	Sorex araneus	42.86	2.00e-19	90.50
IUUC-Sbi-114076	Sorghum bicolor	46.95	1.00e-120	426.00
IUUC-Sre-114918	Sporisorium reilianum	22.35	3.00e-18	86.70
IUUC-Ssc-115561	Sus scrofa	35.16	4.00e-60	225.00
IUUC-Tgu-117011	Taeniopygia guttata	35.84	3.00e-64	239.00
IUUC-Tru-118411	Takifugu rubripes	32.68	6.00e-55	208.00
IUUC-Tsy-119367	Tarsius syrichta	31.89	4.00e-43	169.00
IUUC-Tni-120301	Tetraodon nigroviridis	32.08	6.00e-56	211.00
IUUC-Tca-121265	Theobroma cacao	56.60	1.00e-144	505.00
IUUC-Tre-121997	Trichoderma reesei	25.46	4.00e-19	89.40
IUUC-Tvi-122292	Trichoderma virens	23.39	1.00e-18	88.20
IUUC-Tae-125188	Triticum aestivum	48.09	6.00e-120	423.00
IUUC-Tur-126794	Triticum urartu	49.63	6.00e-101	360.00
IUUC-Tme-127090	Tuber melanosporum	31.35	2.00e-27	115.00
IUUC-Tbe-127646	Tupaia belangeri	32.34	2.00e-51	196.00
IUUC-Ttr-128171	Tursiops truncatus	34.78	1.00e-60	227.00
IUUC-Vda-129871	Verticillium dahliae	25.11	1.00e-19	91.30
IUUC-Vpa-130554	Vicugna pacos	32.48	5.00e-24	105.00
IUUC-Vvi-131698	Vitis vinifera	55.45	3.00e-162	564.00
IUUC-Xtr-131962	Xenopus tropicalis	35.31	2.00e-62	233.00
IUUC-Xma-133803	Xiphophorus maculatus	31.59	6.00e-56	211.00
IUUC-Zma-135693	Zea mays	44.40	3.00e-109	388.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence