iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-043559

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000842

Gene Name

LOC100526905; GLYMA_09G084600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA09G10290	GLYMA09G10290.1	GLYMA09G10290.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-31	109.1	395	425
UBD/Beta-Prp	2.30e-79	268.3	354	603

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           +v+c+a+ +d  ll++G+dD+++kvW l++g
   Q: 395  DVNCVAYsPDsQLLATGADDNKVKVWTLSSG 425
           79******999***************99887 PP

UBD/Beta-Prp

   S: 14   tcvkfspdksllatgsrd.gtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsg 106
           t   f +++++l+ g++  g + vw++++++++ + +gh   v++v +spd+++l+tg++D+ +kvw ls+g c++t+++h++ v++l+f+ps+
   Q: 354  TTAVFNEFGNWLTFGCAKlGQLLVWEWRSESYILKQQGHYFDVNCVAYSPDSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNAVTALHFMPSN 447
           55668899*******9876899************************************************************************ PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrt.vrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgs 199
           ++l+s+s d tir wdl  +  ++++ ++  +   +++ + +g ++ +G+ D++ v +W++ktg+l++ l+g h+ +v+ l f+++   l+s s
   Q: 448  NVLLSASLDGTIRAWDLLRYRNFKTFTTPSPRQFVSLTADISGEVICAGTSDSFeVFVWSMKTGRLMDVLSG-HEAPVHGLVFSPTNAVLASSS 540
           ************************9888888888899999999999999999855****************9.********************* PP
   S: 200  ldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlql 262
           +d+tv+lw++  g+  ++   ht  v+ v   p++  l++ + Dg+i +Wd   g l+ t+++
   Q: 541  YDKTVRLWNVFDGKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEG 603
           **************************************************9766666666665 PP

Organism

Glycine max

Protein Sequence
(Fasta)

MNFRFQNLLG APYRGGNVVI SSNTVLLSPV GNRVAVTDLL KSETTTLPLQ SSSNVTRITV 60
SPDATFLLAI DDRNRCLFIN LRRRALLHRI TFKHRVAASK FSPDGALIAV AAGKLVQIWR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTCGTCTTT AACGACGGAG AATTCCTAAA ACCCTAAACC CCATAAACCT CCATTCCAAC 60
CACACACGGT GACCTCTCGC AGTTCATGCA GGGAACGCCC CCAACAACAC TTACTTCCAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027145--PWP2
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000028--P:ribosomal small subunit assembly

KEGG

gmx:100526905

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gac-042624	Gasterosteus aculeatus	40.00	0.00e+00	659.00
IUUC-Ppa-095678	Physcomitrella patens	56.22	0.00e+00	953.00
IUUC-Pop-099635	Populus trichocarpa	78.67	0.00e+00	1424.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence