iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006574

Ensembl Protein ID

AT1G52730.2

UniProt Accession

Q9SSS7; Q9SSS7_ARATH

Genbank Protein ID

AAD55591.1; AAP37674.1; AEE32845.1; AEE32846.1; BAE99937.1; BAH20036.1

Protein Name

AT1G52730 protein; At1g52730; F6D8.2 protein; Putative uncharacterized protein At1g52730; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

AC008016; BT008315; CP002684; CP002684; AK227970; AK317364

Gene Name

At1g52730; F6D8.2; F6D8_2

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G52730	AT1G52730.2	AT1G52730.2
AT1G52730	AT1G52730.3	AT1G52730.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-26	91.7	268	300
UBD/Beta-Prp	2.70e-45	155.7	25	217

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd..tllvsGsdDgtikvWDlr 31
           gH ++v+c++f ++   + +sGs Dgti++W ++
   Q: 268  GHHGPVHCVRFtPTglSY-ASGSEDGTIRIWQTT 300
           899********9553556.************875 PP

UBD/Beta-Prp

   S: 18   f..spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGs 113
              +pd+ +l+++s+d+   + + +tg+ + +++gh+++v++ ++++++   +++s D  +k+wd  tg+ +h+++ h++ v++++fs+++++l++G+
   Q: 25   SpiTPDGFFLISASKDSHPMLRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFE-HKHIVRACAFSEDTKSLLTGG 121
           255899999****************************************9**************************.********************* PP
   S: 114  hdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq 210
             +++rv+d++      +  ++  g+++++++  ++  +l s+++ + vrlWd+++gk+++tl+   +++v+s +++++g+++ + ++ +tvk+wd  
   Q: 122  FEKILRVFDMNRLDAPPTEVDKSPGSIRTLTWLHSDqTILSSCTDIGGVRLWDVRSGKIVQTLET--KSPVTSAEVSQDGRYITT-ADGSTVKFWDAN 216
           ************99999877777777777777666637777777779****************75..************977655.6789******87 PP
   S: 211  t 211
           +
   Q: 217  H 217
           5 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MEKKKVTIPQ VCHGHSRPVV DLFYSPITPD GFFLISASKD SHPMLRNGET GDWIGTFEGH 60
KGAVWSSCLD NNALRAASAS ADFSAKLWDA LTGDVLHSFE HKHIVRACAF SEDTKSLLTG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAGGAACTAA ATTAAAAAAT ACAAATAAAG GTCTTCTCCT TCCCGTCTAG ATGTAGAAAT 60
CCCTAAAACT TGCTACTGTT TTGCATACGG GGCTTGTACA AATAAAAACC ACCCAATTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006421	Arabidopsis lyrata	99.71	0.00e+00	707.00
IUUC-Acl-008014	Aspergillus clavatus	40.12	3.00e-54	204.00
IUUC-Bdi-014996	Brachypodium distachyon	81.07	2.00e-163	567.00
IUUC-Bol-016209	Brassica oleracea	92.11	0.00e+00	629.00
IUUC-Bra-016858	Brassica rapa	92.96	0.00e+00	632.00
IUUC-Lpe-051246	Leersia perrieri	80.60	1.00e-158	551.00
IUUC-Ncr-068934	Neurospora crassa	38.07	1.00e-49	189.00
IUUC-Oba-075160	Oryza barthii	80.84	2.00e-159	553.00
IUUC-Ogl-077076	Oryza glaberrima	80.84	2.00e-159	554.00
IUUC-Ogu-078591	Oryza glumaepatula	80.84	2.00e-159	553.00
IUUC-Olo-080389	Oryza longistaminata	78.71	3.00e-117	413.00
IUUC-Oni-082190	Oryza nivara	80.24	8.00e-159	551.00
IUUC-Opu-084163	Oryza punctata	80.60	1.00e-159	555.00
IUUC-Oru-084730	Oryza rufipogon	80.84	2.00e-159	553.00
IUUC-Osa-086010	Oryza sativa	80.90	5.00e-160	556.00
IUUC-Pop-099172	Populus trichocarpa	83.14	1.00e-166	578.00
IUUC-Smo-108784	Selaginella moellendorffii	68.13	2.00e-131	461.00
IUUC-Sbi-113932	Sorghum bicolor	81.90	3.00e-165	573.00
IUUC-Tae-123833	Triticum aestivum	79.71	2.00e-160	557.00
IUUC-Tur-126808	Triticum urartu	78.74	1.00e-137	481.00
IUUC-Vvi-131432	Vitis vinifera	81.40	2.00e-163	567.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence