iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007519

UUCD1 version

UUC-ArT-01152

Ensembl Protein ID

AT3G60080.1

UniProt Accession

Q9M1D5; Q9M1D5_ARATH

Genbank Protein ID

AAV74233.1; AAW78589.1; AEE80009.1; BAF01193.1; CAB75923.1

Protein Name

At3g60080; Putative uncharacterized protein At3g60080; Putative uncharacterized protein T2O9.60; RING/U-box superfamily protein

Genbank Nucleotide ID

BT020239; BT020570; CP002686; AK229330; AL138658

Gene Name

T2O9.60; At3g60080

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G60080	AT3G60080.1	AT3G60080.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.10e-07	33.1	169	210

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+C+edf   +  + lpC H++h dC+  w       s + +CPlCr
   Q: 169  CAVCKEDFiiGESARRLPCSHIYHSDCIVPW------LSDHNSCPLCR 210
           ********99555899***************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSSSTTTTTT VHGEPERRTY WCHECDMSLS LLSSSDSDSD SSPLLCPQCR VDFLERMDHD 60
SSSSNLFDVT IGDFEEQDGE NDDEDDEEDW CFVDPAVNSD DNFLLDSPYL HRLLRHLASD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGGTATAGC AAAGTAGTTA TCATTCACAC ATATGCATAC TTATTATAAT CAAACAATAT 60
TATCACTAGC AAAGTCCAAT TAGTAAGTGC AAAGACTTGT AATAAACTTC AAAGAATAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT3G60080

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005837	Arabidopsis lyrata	92.23	4.00e-114	403.00
IUUC-Bol-016348	Brassica oleracea	76.22	1.00e-79	288.00
IUUC-Bra-017044	Brassica rapa	73.05	2.00e-70	258.00
IUUC-Pop-099464	Populus trichocarpa	36.32	7.00e-23	99.40
IUUC-Stu-112438	Solanum tuberosum	48.72	3.00e-26	111.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence