iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098856

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_753870; POPTR_0002s00780g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s00780	POPTR_0002s00780.1	POPTR_0002s00780.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.00e-09	38.4	107	149

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCl++f   d+ +vlp CgH fh +C+  w         + +CP Cr
   Q: 107  CAICLTEFsaGDEIRVLPqCGHGFHVSCIDTW------LGSHSSCPSCR 149
           ********88555*******************......99********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MARPFSFLNA VANSSATTTG SPPQASATVD SDFMVILAAL LCALICVLGL IAVARCAWLR 60
RFSSRNPTPP VPPPPPSVAN KGLKKKVLRS LPKQTFSEDF SGKLPDCAIC LTEFSAGDEI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAGTAGATA ACACTCTCTC CCTCCTCCTC TCTCTCTCTC ACTCTCTTGA AAAGCAAAGA 60
AAAAGGAACA AAACAGAGCT GCCCTCTACT CATCTCGCTC ACATGGCTCG TCCTTTCAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0002s00780g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005492	Arabidopsis lyrata	62.37	7.00e-51	192.00
IUUC-Ath-006886	Arabidopsis thaliana	59.00	8.00e-49	185.00
IUUC-Bdi-014058	Brachypodium distachyon	59.30	4.00e-25	107.00
IUUC-Bol-015898	Brassica oleracea	68.49	1.00e-41	162.00
IUUC-Bra-017625	Brassica rapa	70.64	1.00e-40	158.00
IUUC-Csv-026239	Ciona savignyi	38.03	9.00e-11	59.30
IUUC-Hvu-047055	Hordeum vulgare	46.09	4.00e-28	116.00
IUUC-Lpe-050964	Leersia perrieri	50.66	6.00e-29	119.00
IUUC-Obr-076446	Oryza brachyantha	51.88	7.00e-29	119.00
IUUC-Ogl-077507	Oryza glaberrima	49.66	8.00e-27	112.00
IUUC-Ogu-078762	Oryza glumaepatula	49.66	8.00e-27	112.00
IUUC-Oin-079945	Oryza indica	50.36	1.00e-29	121.00
IUUC-Ome-081518	Oryza meridionalis	51.45	6.00e-27	113.00
IUUC-Oni-082929	Oryza nivara	54.89	4.00e-28	117.00
IUUC-Opu-083456	Oryza punctata	60.27	9.00e-22	95.90
IUUC-Oru-084952	Oryza rufipogon	53.85	4.00e-31	126.00
IUUC-Osa-085373	Oryza sativa	48.98	2.00e-27	114.00
IUUC-Sbi-113838	Sorghum bicolor	52.78	7.00e-25	106.00
IUUC-Tca-121444	Theobroma cacao	67.00	6.00e-52	196.00
IUUC-Tae-124588	Triticum aestivum	55.56	1.00e-23	102.00
IUUC-Tur-126504	Triticum urartu	55.42	6.00e-24	103.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence