iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099002

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_754603; POPTR_0002s08630g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s08630	POPTR_0002s08630.1	POPTR_0002s08630.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.30e-07	31.2	235	276

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++C+e+f    +  + lpC+H++h +C+  w       + + +CP+Cr
   Q: 235  CPVCMEEFkvgGE-ARELPCKHIYHSECIVPW------LRLHNSCPVCR 276
           ********77544.899***************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSLSPPRTRT NGTTGNFQPY WCYQCHQMVR IATTDPSEII CPRCSGQFLC EIGINRPILV 60
VDFTAFDPSP EARLLEALSL MLDPPIRRFN YSLDEPEPEP PRRSWRRNLS LELDGRDNWD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTTTGA GCCCACCCAG AACAAGAACC AATGGCACCA CAGGAAACTT CCAGCCATAC 60
TGGTGCTACC AGTGCCATCA AATGGTCAGG ATTGCCACCA CGGACCCATC AGAAATCATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0002s08630g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005575	Arabidopsis lyrata	44.94	3.00e-63	234.00
IUUC-Ath-007502	Arabidopsis thaliana	45.86	4.00e-63	234.00
IUUC-Bol-015704	Brassica oleracea	46.04	1.00e-62	232.00
IUUC-Bra-017295	Brassica rapa	46.31	1.00e-61	229.00
IUUC-Gma-043875	Glycine max	56.15	2.00e-37	149.00
IUUC-Mtr-058568	Medicago truncatula	52.06	2.00e-88	318.00
IUUC-Oin-079595	Oryza indica	66.67	6.00e-33	135.00
IUUC-Ome-081151	Oryza meridionalis	64.65	2.00e-36	145.00
IUUC-Pma-094408	Petromyzon marinus	37.02	1.00e-25	109.00
IUUC-Ppe-101439	Prunus persica	53.51	4.00e-79	287.00
IUUC-Sce-106136	Saccharomyces cerevisiae	44.68	4.00e-07	49.30
IUUC-Sly-111021	Solanum lycopersicum	49.85	6.00e-76	276.00
IUUC-Stu-112558	Solanum tuberosum	50.75	2.00e-78	285.00
IUUC-Tca-121535	Theobroma cacao	56.41	3.00e-92	330.00
IUUC-Tbe-127794	Tupaia belangeri	43.90	7.00e-16	77.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence