iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121725

Ensembl Protein ID

EOX93948

UniProt Accession

A0A061DVA5; A0A061DVA5_THECC

Genbank Protein ID

EOX93948.1

Protein Name

WD-repeat protein isoform 2

Genbank Nucleotide ID

CM001879

Gene Name

TCM_002958

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_002958	EOX93948	EOX93948
TCM_002958	EOX93947	EOX93947

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-27	95.6	507	539
UBD/Beta-Prp	1.70e-61	209.0	546	783

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           +++vtc++f sd +ll+s+++D+++ +W+++t 
   Q: 507  NSKVTCCHFsSDgKLLASAGHDKKVVLWNMDTL 539
           789*******999****************9875 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkl.lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsps 105
           ++hk vit+v f p++s+lat+s d+++++wd+ ++++ ++ + gh+a+v +++f+p++  ++  + +D+ i+ w+l+t++c++ +kg +++v   +f+p 
   Q: 546  EEHKLVITDVRFRPNSSQLATASVDKSVRLWDIANPSFcVQAYNGHTAPVMSLDFHPKKTdLFCFCDNDNEIRYWNLNTFSCTRMFKGGTAQV---RFQPR 643
           689********************************99957777**************9877*****************************998...599*9 PP
   S: 106  gdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvkl 206
             +l+++ +d+++ ++d+e +      ++gh+++vn+++++ +g++l+s s  + v++W++++g+++++l++   ++ +s  f+++   l+ ++  ++++l
   Q: 644  IGHLLAAVSDKVVSIFDVEADRQTF-SFQGHSEMVNYICWDANGDYLASVSH-SLVKVWSVASGECIQELSS-GGNQFHSCVFHPSYSTLLVIGGISSLEL 741
           999*****************99998.9**********************996.89***************99.9*************************** PP
   S: 207  wdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
           w++ +++  +t  +h++ v+ ++ sp +  ++s+s+D s+++W
   Q: 742  WNMAENK-SMTIPAHENIVSALAQSPVTGMVASASHDSSVKLW 783
           ***8776.99********************************* PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MAQSNWEADK MLDVYIHDYL LKRKLHASAK AFMTEGKVAT DPVAIDAPGG FLFEWWSVFW 60
DIFIARTNEK HSEAAAAYIE AQQIKAREQQ QLQMQQLQLM QNRNVQLQRR DSNHPALGGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCAGA GTAATTGGGA AGCTGATAAG ATGTAAGAAT AGTTGTAAAA TTTATAGTTA 60
CAGCTTTTGT CTTTTGAAGT GATTATTTGA TTAACTAATT TTGAACTTGT TCACTGTCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gma-044268	Glycine max	67.85	0.00e+00	983.00
IUUC-Mtr-058727	Medicago truncatula	72.30	0.00e+00	1028.00
IUUC-Pop-099999	Populus trichocarpa	77.13	0.00e+00	1127.00
IUUC-Ppe-101584	Prunus persica	81.47	0.00e+00	1162.00
IUUC-Sly-111127	Solanum lycopersicum	71.93	0.00e+00	1045.00
IUUC-Stu-112404	Solanum tuberosum	73.04	0.00e+00	1046.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence