iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099630

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_559838; POPTR_0005s26160g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s26160	POPTR_0005s26160.1	POPTR_0005s26160.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.60e-28	97.9	381	453
E3 adaptor/Cullin RING/DCX/DWD	1.90e-10	41.7	1127	1156

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceens 73
           +p++f+CpI+++l++dPv+l++G+ty+r++I++w+++g++tcP+trqpl+ ++l + n++l+rli +w e++ 
   Q: 381  PPKDFVCPITGQLFNDPVTLETGQTYERKAIQEWVKRGNTTCPITRQPLSANSLpKTNYVLKRLITSWKEQHP 453
           699*******************************************************************996 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWD 29
           Ht  vtcl   s+ + l sGs D+t++vW 
   Q: 1127 HTKAVTCLYIsSSgDKLYSGSLDKTVRVWA 1156
           999*****889556***************6 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEGSYRFAMD QKDIVRFLIT TVGSFTQDRL INKEQRTQHK EQCAERLAAE DGSCYKDTEV 60
RYSDQAVLAN LDWGIEALEE AIDTSNMETK LARLDYAEKM LQVCALLNSD QRTAGVPNFY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATGGAAGG AAGCTATAGG TTTGCGATGG ACCAAAAGGA TATTGTGAGG TTCTTGATTA 60
CCACCGTGGG AAGTTTCACA CAAGATCGTT TGATCAATAA AGAGCAAAGA ACCCAGCACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0005s26160g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002936	Amborella trichopoda	36.43	0.00e+00	801.00
IUUC-Olo-081050	Oryza longistaminata	35.19	8.00e-87	314.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence