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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007179
UUCD1 version UUC-ArT-00384
Ensembl Protein ID AT3G59940.1
UniProt Accession Q9M1Y1; Q8L991; SKI20_ARATH
Genbank Protein ID CAB75813.1; AEE79987.1; AAL67078.1; AAL91214.1; AAM14179.1; AAM66106.1
Protein Name F-box/kelch-repeat protein SKIP20; SKP1-interacting partner 20
Genbank Nucleotide ID AL138647; CP002686; AY074382; AY081325; AY091240; AY088575
Gene Name SKIP20; At3g59940; F24G16.210
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G59940 AT3G59940.1 AT3G59940.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexHINTMentha
Protein Expression/Proteomics
Status Reviewed
Details
Family Domain References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box F-box 23720308
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Protein Sequence
(Fasta)
MGVSKKKSGE IRGDLIPGLP EELAIECLVR VPFQFHSSIK SVCRSWKCVI SSRSFIKERI 60
GFGKAESLLC LVQPLTSPPS PAMMEGGEMS QKKKEEEEGE SQMTQQLLQP RITGTPLYGL 120
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Protein Fasta Sequence



>IUUC-Ath-007179|E3,F-box|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
CTTTATCTTC TTTGTTATAA AAGCCTCTTT GCCACTTCTC TTACCAATAG CATCTCCTTC 60
AGTGTCTCTT ACAGTTTCCG ATCTATCCAA ATCATAGATT CTTTTATCTT CACAATCTGT 120
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Nucleotide Fasta Sequence



>IUUC-Ath-007179|E3,F-box|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0880--Kelch repeat
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom
IPR015915--Kelch-typ_b-propeller
IPR006652--Kelch_1

Pfam

PF01344--Kelch_1

SMART

SM00256--FBOX
SM00612--Kelch

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0080037--P:negative regulation of cytokinin-activated signaling pathway
GO:0016567--P:protein ubiquitination
GO:2000762--P:regulation of phenylpropanoid metabolic process

KEGG ath:AT3G59940
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-006001 Arabidopsis lyrata 91.15 0.00e+00 664.00
IUUC-Bra-017941 Brassica rapa 78.24 5.00e-163 566.00
IUUC-Pop-099744 Populus trichocarpa 44.52 2.00e-83 302.00
IUUC-Tvi-122559 Trichoderma virens 26.44 4.30e-02 30.80
IUUC-Uma-129507 Ustilago maydis 33.93 2.30e-01 29.60
IUUC-Vda-129714 Verticillium dahliae 30.00 3.70e-02 31.60
IUUC-Vvi-131439 Vitis vinifera 44.23 3.00e-59 221.00
Created Date 25-Jun-2017

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