iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.50e-28	98.0	11	79

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
           vp +f+CpIsl++M+ Pv l++G+tydr sI++wl++g++tcP t+q l+++++vPnltl+rli++w +
   Q: 11   VPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEFVPNLTLHRLIDHWSD 79
           8999***************************************************************86 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MRSDDLYITT VPCFFKCPIS LDVMKSPVSL STGVTYDRVS IQRWLDDGNN TCPATMQILQ 60
NKEFVPNLTL HRLIDHWSDS INRRADSESP ESDTPTRDEI NAAIERFRIE NDARSKILRF 120

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Nucleotide Sequence
(Fasta)

ATTTTTTTTT AAATGGAAAA GTATCAAGAG GTTGTTCAAA AAGTGAATTT TGACGTCAGC 60
ATATTTGAAC TCTCTCTCAT GACTCATCAT CTTCTTAAAA CCTAACCACA CGAGTCACGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0010200--P:response to chitin

KEGG

ath:AT5G09800

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005648	Arabidopsis lyrata	90.34	0.00e+00	683.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence