iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-016453

Ensembl Protein ID

Bo8g109040.1

UniProt Accession

A0A0D3DY04; A0A0D3DY04_BRAOL

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo8g109040	Bo8g109040.1	Bo8g109040.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-36	124.1	140	178
UBD/Beta-Prp	1.00e-54	187.3	12	252

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +++ ++f +d + lvsG+ D+++k+WD++ g+ll+
   Q: 140  GHTRGISTVKFtPDgRWLVSGGLDNVVKIWDITAGKLLH 178
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
            +h++ ++c+ + ++ ++ll+tg++d ++ +w++ + + l sl gh++++ +v+f+ ++ + + g++ ++ik+w+l+  k v+ ++gh ++  +l+f
   Q: 12   LAHSANVNCLSIgKKTSRLLLTGGDDCKVNLWSIGKSTSLTSLCGHTSPIDSVTFNTEEALVLAGASSGVIKLWNLQEAKVVRGFTGHISNCSALEF 108
           57999999999999*********************************************************************************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgs 199
           +p g++l+sGs+d  +++wd++++ c++ t +gh++ +++v++ pdg+ lvsG+lD++v++Wd+  gkll++++  h+++++sl+f++  + l++gs
   Q: 109  HPFGQYLASGSSDANLKIWDIRKKGCIQ-TYKGHTRGISTVKFTPDGRWLVSGGLDNVVKIWDITAGKLLHEFKF-HDGPIRSLDFHPLEFLLATGS 203
           ****************************.*********************************************9.********************* PP
   S: 200  ldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
            d+tvk+wdl+t e + + +   + v+s++f+p+++ l +g +Dg ++++
   Q: 204  ADRTVKFWDLETFELIGSTRPEATGVRSIAFHPDGQSLFCGLDDG-LKVY 252
           ****************************************97665.4443 PP

Organism

Brassica oleracea

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKRGYKLQE FLAHSANVNC LSIGKKTSRL LLTGGDDCKV NLWSIGKSTS LTSLCGHTSP 60
IDSVTFNTEE ALVLAGASSG VIKLWNLQEA KVVRGFTGHI SNCSALEFHP FGQYLASGSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGAAGC GTGGATACAA GCTGCGTATC CTTATTACAT TATTCTCTGC TTGGAAACTT 60
AATCTCAATT ACAAAGTAAC AAAATTTCTC TTAATATATA TCTATTTATT TTCACCCCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005897	Arabidopsis lyrata	72.87	0.00e+00	1409.00
IUUC-Ath-006686	Arabidopsis thaliana	72.72	0.00e+00	1407.00
IUUC-Bra-017924	Brassica rapa	86.29	0.00e+00	1411.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence